Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00690 ATGGGTCTAGATGAGTGCAAAGGTAGTGTTGTTGAGGTGTTAAATTCAGTTCATGAAGTGATTGATGAGAATTTAAGTAATTTGGTTGAAGGGGTTGGAGAAGTTGGAACTTCAAGAGAGGTGAGTAAGGATTCAGGATCCAATAAGGAGCTAAACGAGACGCCTGAGGAAGTTAAGGTTCGGGAAAAGCGCGATGAATTGCCCGTTGTTGATCAAGGAACTAGTTATAGTTCAAGCAATTTGGTTAATCAGGGTGTGGTTGAGACAGTGGTTGTAATAGATGCTGTTAATGTTCAGACTGAGGGTATGAAATTGGAAGCAAAAGCTGATGAATCAGGGCTTAGTTTGGTTTCAATGAAAGCGCCGAAAGGGATGTGTGAAACTGATAAAGATTCATGTATTATTGATATGAAGTGTAGTAGCCACAAAGGGTTTTATGAGGTTTCACAAGGTGAAAAGATTTGTAGGATTTGTCATCTGACTTTTGGACAGTCGTCGGATGCAACAAGTGTTGAAAATGGTAGTGCTACAAGTGGTGATTTTATTCAACTCGGTTGTTCGTGTAAAGATGAGCTCGGCATTGCACACATTCATTGTGCTGAGGTGTGGTTCAAGCTCAAGGGAAACAGGTTATGCGAAATATGTGGCGAGACTGCAAAAAATGTTTCTGTTGCTACTAATAATGGATTTATGGAAGAGTGGAATGATAGAAGATTCATGGACAATGACGGTAACTCATCCCAGCAAAGGTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAATTTCTTGATGGCGTGCCTGGTAATAGCTTTCATTCTGCCATGGTTTTTTCATGTAAATATGTTCTAG 852 0.4061 MGLDECKGSVVEVLNSVHEVIDENLSNLVEGVGEVGTSREVSKDSGSNKELNETPEEVKVREKRDELPVVDQGTSYSSSNLVNQGVVETVVVIDAVNVQTEGMKLEAKADESGLSLVSMKAPKGMCETDKDSCIIDMKCSSHKGFYEVSQGEKICRICHLTFGQSSDATSVENGSATSGDFIQLGCSCKDELGIAHIHCAEVWFKLKGNRLCEICGETAKNVSVATNNGFMEEWNDRRFMDNDGNSSQQRFGGCWRGQPFCNFLMACLVIAFILPWFFHVNMF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00690 283 ProSiteProfiles Zinc finger RING-CH-type profile. 147 222 IPR011016 GO:0008270
Trre4g00690 283 SMART ringv_2 154 216 IPR011016 GO:0008270
Trre4g00690 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 220 IPR013083 -
Trre4g00690 283 MobiDBLite consensus disorder prediction 35 60 - -
Trre4g00690 283 Pfam RING-variant domain 155 215 IPR011016 GO:0008270
Trre4g00690 283 MobiDBLite consensus disorder prediction 43 60 - -
Trre4g00690 283 SUPERFAMILY RING/U-box 151 218 - -
Trre4g00690 283 PANTHER ZINC FINGER, RING-CH-TYPE 42 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00690 Trre-Chr4 4987819 4989379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00690 135 282 C3H Transcription Factor Family AT5G05830 40.132 5.32e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00690 - - gmx:100791720 368.237