Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00689 ATGGCAAGTGTTAAAGTGTTTTCTTGGTTTATTTCCTTTATTTTTCTATGGAATTTGGTGTCATTTGTTGTTGAGGGTACCGAAAGTCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCTATGAAGAGTAAGATGAATGATGAGTCACATGTTATGAATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTTGGTTGCTCTTCTGAGGGTTATGTCATTTCTTTGGAAATGGCTAGTGCAGGTTTATCTGGAATAATTTCCTCAGGAATTGGAAATTTGAGCCACCTCCGAACACTGTTATTGCAGAACAATCAGCTATCTGGTCCTATCCCGGTTGAGATAGGAAACCTGTTAGAACTTCAGACTCTTGATCTTTCCGGTAACCAGCTTGTTGGGAACATTCCTAGTTCTTTGGGCTCTTTGACTCATCTTAGTTACTTGAGGCTCAGCAAAAATAAACTATCTGGACAGATCCCTCAACTTGTTGCTAATCTCACAGGACTTTCGTTCTTGGATTTGTCATTCAACAATCTCAGTGGCCCTACTCCAAAAATCTTAGCAAAAGGTTATAGTATTTCAGGAAACAACTTCCTCTGTACATCATCCTCACAAATTTGTATGAGCGGTTCGAAGCCAGCAAATGATACAGGATCATCATCTCAAACAGGCAGAAGTCATCGACATACGGTGCTTTCTGTTGTTATTGGCTTTAGTTGCACGTTTGTAATTTCAGTGATGCTGCTCGCATATTGGTTACATTGGTACAAATCACGCATCCTCTATTCATCTTATGTGGAGCAAGATTGTGAATTTGGTATCGGTCATTTGAAGAGGTTCTCCTTTCGTGAATTGCAAATTGCTACTGGAAATTTCACTTCAAAAAATATCGTAGGACAAGGTGGTTTTGGTGTTGTATACAAAGGATGCCTTGCTAACAAAATGTTGGTGGCAGTAAAGAGGCTTAAAGATCCTAATTATACCGGAGAAGTGCAGTTTCAAACCGAAGTTGAGATGATTGGCTTGGCTGTACATCGTAACCTCTTGCGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCGTTCATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGAGAGTTTCCGTGGAAAGCCATGTTTAGATTGGAACAGGCGAATGCACATTGCTGTTGGGGCTGCACGGGGGCTTTTATATTTGCATGAGCAGTGCAATCCAAAAATAATCCACAGGGACGTTAAGGCTGCAAACATTTTGCTAGATGAAAGTTTTGAAGCTGTGGTGGGAGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACACGTAACTACTGCAGTACGCGGCACTGTAGGACACATTGCTCCCGAGTATCTCTCTACTGGACAATCTTCTGAAAAAACAGATGTGTTTGGATTCGGCATATTACTTTTGGAGCTTATAACAGGACAGAAGGCATTGGATGCCGGAAACGTTCAGGTCCAAAAGGGAATGATTCTTGATTGGGCTAGAACTTTATTTGAGGACAAGCGGCTGGAAGTGTTAGTTGATAGGGATCTAAAGGGATGTTATGATCCGGTAGAGTTAGAAAAAGCGGTCGAGTTGTCTATACAATGTACTCAATCTCTTCCTAGTTTGAGGCCAAAGATGTCAGAAGTTTTAAAGGTTCTTGAAGGGCTTATTGGGTTGTCAATGAGGCCAGAAGAGTCACAAGGTGGGGGCAACCTATATGATGAAAGAAATTGCAGTTTCTCTCAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAACTTTCTGGACCTAGGTGA 1872 0.4108 MASVKVFSWFISFIFLWNLVSFVVEGTESLLSPKGVNYEVAALMSMKSKMNDESHVMNGWDINSVDPCTWNMVGCSSEGYVISLEMASAGLSGIISSGIGNLSHLRTLLLQNNQLSGPIPVEIGNLLELQTLDLSGNQLVGNIPSSLGSLTHLSYLRLSKNKLSGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSQICMSGSKPANDTGSSSQTGRSHRHTVLSVVIGFSCTFVISVMLLAYWLHWYKSRILYSSYVEQDCEFGIGHLKRFSFRELQIATGNFTSKNIVGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPFMPNGSVADRLRESFRGKPCLDWNRRMHIAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNVQVQKGMILDWARTLFEDKRLEVLVDRDLKGCYDPVELEKAVELSIQCTQSLPSLRPKMSEVLKVLEGLIGLSMRPEESQGGGNLYDERNCSFSQNYSDVHEEPSFIIEAIELSGPR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00689 623 FunFam Somatic embryogenesis receptor-like kinase 1 376 591 - -
Trre4g00689 623 Gene3D Transferase(Phosphotransferase) domain 1 376 577 - -
Trre4g00689 623 ProSiteProfiles Protein kinase domain profile. 300 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00689 623 Gene3D Phosphorylase Kinase; domain 1 270 375 - -
Trre4g00689 623 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Trre4g00689 623 FunFam Somatic embryogenesis receptor kinase 1 270 375 - -
Trre4g00689 623 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Trre4g00689 623 Pfam Protein kinase domain 301 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00689 623 SUPERFAMILY Protein kinase-like (PK-like) 283 573 IPR011009 -
Trre4g00689 623 Gene3D Ribonuclease Inhibitor 36 216 IPR032675 -
Trre4g00689 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 571 - -
Trre4g00689 623 SMART serkin_6 300 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00689 623 SUPERFAMILY L domain-like 38 208 - -
Trre4g00689 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 36 217 - -
Trre4g00689 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00689 Trre-Chr4 4975314 4978911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00689 44 623 Receptor kinase-like Gene Family AT5G45780 70.740 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre4g00689 Pkinase 7.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00689 - - gmx:100810610 1085.48