Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00687 ATGTCTGAGGATAAGGAGATGTCTACTTCTGTTATTAATGGGAATGATTCCCTCACTGGTCATATCATATCGACAACAATTGGAGGCAAAAATGGCGAGCCTAAACAGACTATTAGTTACATGGCAGAGCGTGTTGTAGGAACTGGTTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACAGGTGAAGCTGTGGCCATTAAGAAAGTTTTACAAGACCGAAGATATAAGAACCGTGAACTACAGTTGATGCGTGTGATGGATCATCCAAACGTGGTCACTTTGAAGCATTGCTTCTTTTCCACAACAAGCACAGATGAGCTTTTTTTGAATTTGGTGATGGAATATGTTCCGGAGTCCATGTATCGGGTCTTAAAGCATTACAACAATGCGAATCAGAGAATACCAATAATATATGTAAAACTTTATATGTACCAGATCTTCAGGGGGTTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGGGACTTGAAGCCTCAAAATATACTGGTTGATCCTCTTTCACATCAAGTTAAGCTATGTGATTTTGGAAGTGCAAAAATGCTGGTCAAGGGTGAAGGTAATATATCATACATATGTTCACGATTCTATCGAGCCCCAGAACTCATATTTGGTGCTACGGAGTATACGACCTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCTTTATTCCCTGGTGAAAATGCAGTGGACCAGCTCGTACATATTATAAAGGTGCTCGGAACACCCACCCGGGAGGAAGTACGCTGCATGAATCCCAATTACAATGACTTCAGGTTTCCACAAATTAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCCGGCTTTTGCAGTACTCCCCAAGTCTTCGTTGCACCGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTCCCCCCTCTTTTCAACTTCAAACAGGAATTATCAGGAGCATCTCCAGAGCTTGTTAATAAGTTGATACCTGACCACGTAAAGCGGCAAATAGGACTACAATTTGTTCAACCAACTGGATCATGA 1143 0.4287 MSEDKEMSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVVTLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYNNANQRIPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLSHQVKLCDFGSAKMLVKGEGNISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHVKRQIGLQFVQPTGS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00687 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Trre4g00687 380 CDD STKc_GSK3 35 327 IPR039192 -
Trre4g00687 380 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 5 369 - -
Trre4g00687 380 SUPERFAMILY Protein kinase-like (PK-like) 39 349 IPR011009 -
Trre4g00687 380 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Trre4g00687 380 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Trre4g00687 380 FunFam Glycogen synthase kinase-3 beta 24 119 - -
Trre4g00687 380 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00687 380 FunFam Shaggy-related protein kinase kappa 120 367 - -
Trre4g00687 380 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Trre4g00687 380 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00687 380 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00687 Trre-Chr4 4966892 4970283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00687 44 362 MAP Kinase Gene Family AT3G59790 36.310 5.05e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre4g00687 Pkinase 5.7e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00687 K14502 - gmx:100779909 753.051