Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00684 ATGAAAACCTTTTATAAGTTCTTGATTCTTCTATCACTTATTACTCTCACAGAATCATTATCATCTTCATGCAATAGTGAAAACAAGAACCTAGTATCAAAAACTTTCCAATTTATCTCAGGATTCAACACTTCCTTATTATTCCAAACAAATTCTTTCAACTGTTCAAAAGGTCAAATTAACATCATAAAACTTCCATCCAAAAACTTAACAGGAAACATCTCATGGAGATACCTAAGAAACATGACAAATTTACAGTTTCTTGATCTTTCAGGAAATTTTCTACAAGGTCAAATACCAAACTGGTTTTGGAGAAGTTTTTCAAGTTTATCAACAGTGAATCTTTCTAACAACAGATTCGGTGGAAGCATTGCAATGACAACAAAAACAAAACCCATTTCTCAAAATGGTTCCTTTTTCTCATCATCATTACAAAATCTCAATCTTTCACATAACAGGTTCACAAATCAGGTTCAAGTTTCATTTTTTCATAACCTTAAAATCCTCGACCTTTCACACAACAACCTTAACACTTTACCTTATGGTTTTCAAAACGTTACAAAACTTAACTACCTTGATCTCTCAAACTGTAACATCAAAGGTAACATAAAACCCATTTCTTACCTTAAATCACTTTCTTCCTTAAACCTTTCAAACAACTCTTTGAATGGTAGTTTCCCTTTAGATTTTCCATCTTTAAACAACCTTAAATTCCTCAATATCTCAAACAACAATTTCAACTCTTCAATTTCCTTAAACAAATTCATCAAAAAATTCGGAAAATCATCATTCATTCACGCAGGTACCAATTTCAATTCCAACAACAAATCATCCAAAACTGTATCAAACATTCATTCAAATTCAAATCAAATTTCAACTCTACCACACCATCCCCAACAACTCCATATGAAAAAGACAAAACCCATTCACAATGAGAAAACCAAACAAAAGTCAAAAACAAAAACCGTGATTATTGCCATAGTTTCCTCAGTGTCATCAATTGTTTTTGTCGTGTTATGTATCTGGGCAATCTTTATTTACAAAAAAAAGAGAAATTTAGCAAAAAAAAACAAATGGGCAATTTCAATATCAAAACCAATAACAGGATTAACAACAACAGCCGTTAAGATGGAGAAATCTGGACCGTTCGCATTTGAAACAGAATCAGGAACATCATGGGTAGCTGATCTGAAAGAACCATCATCAGCATCAGTTGTAATGTTTGAGAAACCTTTGATGAACATTACATTTGTTGATCTTATGAATGCCACGTCATACTTTGGAAAAGATTCTCAGTTAGCTGAAGGTAGATGTGGGCCCGTTTATCGTGCTGTTTTACCAGGAGAGTTACACGTGGCAATCAAGGTTCTTGAAAATGCTAGAGACGTTGATCATGATGATGCTGTTGATACTTTCGTTGACTTGTCTCAGCTTAAACATCCCAATCTTTTGCCTCTCTCTGGTTACTGCATTGCAGGGAAGGAGAAGCTAGTGTTGTACGAGTTTATGTCAAACGGAGACTTAGGCAGGTGGCTACACGAACTACCAACGGGTCAAACTAAAGTGGAGGATTGGAGTGGCGACACATGGGAGATTCAAAACGGTGTCGGTTCACAAACCCCCTCGCCAGAAAAAATGGGTTGGCCAACACGACACCGTATCGCTATAGGAGTAGCGCGTGGTCTAGCTTTTCTCCACCATGCAGGATCAAAGCCTGTAGTTCACGGCCATTTGGTAACATCAAATGTCCTACTTGCTGATGATTTCGAGCCTCGAATTGCTGATTTTGGGTTCCGAAAATTCGGGCAACAATGTCCTCCGAATTGTAGCACCGAAACAGATGTTTATTGCTTTGGTGCGGTGCTTATGGAGCTTTTAACGGGGAAGCCTGGTACGGCAGAGACAGTTGTTTGGGTGAGGAAACTTGTAAGAGAAGGACATGGGGTGAGGGCGATTGATGAAAGGATGAAACTCGACGGTGGTGACTCAGAGAGTGAAATGGTGGAGAGTCTCCGAGTTGCGTATTTATGCACTGCTGAGTCACCTGGGAAGAGGCCCACTATGCAACAAGTTTTAGGGCTTCTCAAAGATATTCATCCAAGAGCTGCACTTAGATTGAGTTGA 2124 0.3799 MKTFYKFLILLSLITLTESLSSSCNSENKNLVSKTFQFISGFNTSLLFQTNSFNCSKGQINIIKLPSKNLTGNISWRYLRNMTNLQFLDLSGNFLQGQIPNWFWRSFSSLSTVNLSNNRFGGSIAMTTKTKPISQNGSFFSSSLQNLNLSHNRFTNQVQVSFFHNLKILDLSHNNLNTLPYGFQNVTKLNYLDLSNCNIKGNIKPISYLKSLSSLNLSNNSLNGSFPLDFPSLNNLKFLNISNNNFNSSISLNKFIKKFGKSSFIHAGTNFNSNNKSSKTVSNIHSNSNQISTLPHHPQQLHMKKTKPIHNEKTKQKSKTKTVIIAIVSSVSSIVFVVLCIWAIFIYKKKRNLAKKNKWAISISKPITGLTTTAVKMEKSGPFAFETESGTSWVADLKEPSSASVVMFEKPLMNITFVDLMNATSYFGKDSQLAEGRCGPVYRAVLPGELHVAIKVLENARDVDHDDAVDTFVDLSQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGQTKVEDWSGDTWEIQNGVGSQTPSPEKMGWPTRHRIAIGVARGLAFLHHAGSKPVVHGHLVTSNVLLADDFEPRIADFGFRKFGQQCPPNCSTETDVYCFGAVLMELLTGKPGTAETVVWVRKLVREGHGVRAIDERMKLDGGDSESEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPRAALRLS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00684 707 Pfam Protein tyrosine and serine/threonine kinase 430 600 IPR001245 GO:0004672|GO:0006468
Trre4g00684 707 ProSiteProfiles Protein kinase domain profile. 427 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00684 707 FunFam Putative LRR receptor-like serine/threonine-protein kinase 388 502 - -
Trre4g00684 707 SMART LRR_typ_2 163 185 IPR003591 -
Trre4g00684 707 SMART LRR_typ_2 82 106 IPR003591 -
Trre4g00684 707 SMART LRR_typ_2 209 232 IPR003591 -
Trre4g00684 707 Pfam Leucine Rich Repeat 84 103 IPR001611 GO:0005515
Trre4g00684 707 SUPERFAMILY Protein kinase-like (PK-like) 404 695 IPR011009 -
Trre4g00684 707 Gene3D Ribonuclease Inhibitor 18 138 IPR032675 -
Trre4g00684 707 PRINTS Leucine-rich repeat signature 166 179 - -
Trre4g00684 707 PRINTS Leucine-rich repeat signature 209 222 - -
Trre4g00684 707 SUPERFAMILY L domain-like 58 250 - -
Trre4g00684 707 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
Trre4g00684 707 Gene3D Phosphorylase Kinase; domain 1 387 502 - -
Trre4g00684 707 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Trre4g00684 707 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 48 698 - -
Trre4g00684 707 Gene3D Ribonuclease Inhibitor 139 259 IPR032675 -
Trre4g00684 707 Gene3D Transferase(Phosphotransferase) domain 1 503 704 - -
Trre4g00684 707 Pfam Leucine rich repeat 143 199 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00684 Trre-Chr4 4939550 4943165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00684 63 698 Receptor kinase-like Gene Family AT5G07280 30.486 5.05e-68 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trre4g00684 PK_Tyr_Ser-Thr 8.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00684 - - gmx:100778920 876.7