Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00681 ATGGAGAAGAAAGGAACAATTCTAATGCAAAAGTATGAGGTAGGACGCATGCTTGGCCAAGGAAATTTCGCGAAAGTTTACCATGCAAGGAACTTATCGACAGGACAAAATGTTGCCATCAAAGTGTTTAACAAAGAGATGATCATGAGAGTCGGTATGAAGGAACAAATGAAGCGCGAAATCTCTGTGATGCGTCTTGTTAGACACCCTAACATTGTCGAATTCTATGATGTCATGGCAAGCAAAACAAAGATATATTTCGCTATGGAATATGTGAAAGGCGGTGAGCTTTTCAATAAAGTGTCTCGAGGGAAGCTGAGGGAAGATGTAGCTAGAAAATATTTCCAACAACTTATTGAAGCTGTTAATCATTGTCACAAAAGAGGGGTTTATCACCGCGATCTTAAACCGGAAAATCTTCTCCTCGATGAAAATGGTAATCTTAAAGTTTCGGATTTCGGTCTCAGTGCACTTTTGGAATCAAAAAAGAAAGATGGTCTTCTTCACACAACATGTGGTACTCCAGCTTATGTAGCACCTGAAGTTATCAAGAAAAAAGGTTATGATGGAGCCATTGCAGATATTTGGTCTTGTGGTGTTATTCTCTATGTTCTATTAGCTGGTTATCTTCCATTCAATGATAAAAATCTAATGGAAATGTATAAAAAGATAACAAAAGCAGATTTCAAGTTTCCGCAATGGTTTCGTTCTGATGCGAAAAGGCTTATATATAGAATCCTTGATCCTGATCCAAGAACAAGAATTACTACTAACAAGATAATGCAAAATAATTGGTTTAAAAAAGGGTATAAGCAAATTGAAGGACCAAAATTACCACCTATATCGCCTACGCGCCGCGATGTCTCAGATGTTCATGATGCATTTGATGAGTTATCATCACCAACATCAAGTTCAAATGAACCTCCAAGTCCAATGTCAGTTAAAGATCATGAAGAATATGCTATGAAACCATATTGTTTCAATGCATTTGATATCATATCACTTTCTTCAGGATTTGATCTTTCTGGTTTATTTGAGAAAGATATGAATGAAAGACAACATGCAAGATTTGCTACAAAAAGATCACCTTCAATAGTTGTGTCAAAACTTGAAGAAATAGCACAATTAGATGGTAGATTTAAGGTTATGAAGCAAAATGGGATTGTAAGATTGGAGGGAAATGAAACAGGAATAAATGAACAACTAAGTATAGATACAGAAATCTTTGAAGTTACTTCTTCAGTTTATATTGTTGAGGTGAACAAAATTGCTGGAGACATGTTGGAATATAGGAATTTTTGGAATCAATTCTTAAAGCCTTCTCTAAATGAAATTGTTTGGGTTTGGCAAGGATATGAACAGTTCGCACCCGCAATTGTTGCTACAATCTAA 1392 0.3578 MEKKGTILMQKYEVGRMLGQGNFAKVYHARNLSTGQNVAIKVFNKEMIMRVGMKEQMKREISVMRLVRHPNIVEFYDVMASKTKIYFAMEYVKGGELFNKVSRGKLREDVARKYFQQLIEAVNHCHKRGVYHRDLKPENLLLDENGNLKVSDFGLSALLESKKKDGLLHTTCGTPAYVAPEVIKKKGYDGAIADIWSCGVILYVLLAGYLPFNDKNLMEMYKKITKADFKFPQWFRSDAKRLIYRILDPDPRTRITTNKIMQNNWFKKGYKQIEGPKLPPISPTRRDVSDVHDAFDELSSPTSSSNEPPSPMSVKDHEEYAMKPYCFNAFDIISLSSGFDLSGLFEKDMNERQHARFATKRSPSIVVSKLEEIAQLDGRFKVMKQNGIVRLEGNETGINEQLSIDTEIFEVTSSVYIVEVNKIAGDMLEYRNFWNQFLKPSLNEIVWVWQGYEQFAPAIVATI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00681 463 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00681 463 FunFam Non-specific serine/threonine protein kinase 6 308 - -
Trre4g00681 463 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Trre4g00681 463 ProSiteProfiles NAF domain profile. 322 346 IPR018451 GO:0007165
Trre4g00681 463 MobiDBLite consensus disorder prediction 295 315 - -
Trre4g00681 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Trre4g00681 463 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 432 - -
Trre4g00681 463 MobiDBLite consensus disorder prediction 296 311 - -
Trre4g00681 463 SUPERFAMILY Protein kinase-like (PK-like) 8 311 IPR011009 -
Trre4g00681 463 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00681 463 FunFam Non-specific serine/threonine protein kinase 322 447 - -
Trre4g00681 463 Pfam NAF domain 325 384 IPR004041 GO:0007165
Trre4g00681 463 Gene3D Kinase associated domain 1, KA1 321 448 - -
Trre4g00681 463 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Trre4g00681 463 Gene3D Transferase(Phosphotransferase) domain 1 3 318 - -
Trre4g00681 463 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00681 463 CDD CIPK_C 328 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00681 Trre-Chr4 4903166 4904557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00681 1 451 CBL-interacting serine-threonine protein kinases AT5G45820 60.398 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre4g00681 Pkinase 4.4e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00681 K07198 - gmx:100807927 664.07