Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00680 ATGAAGAACCCTGTTGTAGAAAAGTTCTCTGAATTCTATGAAAAATGGGTTTTAAAGCTTGAAGAAATTCACCATGAGCTTATAGAAGTATCAAAGAGAAAAACAGAGTTGATGATGATGAATAATGAACAAGAATTACAAATACTAGTTTCAAAAGTCACAACTCATTTGAAAGAATACTACACTGTGAAATGGGGTGCAGCACATGAAGATGTTGTGGTTTTTTTCACACCAACATGGCTTAGTCCTTTAGAAAATGCTTACCTATGGGTAACTGGTTGGAAACCTTCCTCAATTTTTCGCATGCTCGAGAGATTTGACATAACAGATGAACAGAGAAAGGAGATAGAGAAACTTAGAGTGAAGATAAAGATGGAGGAAGAGAAAGTGGAGAGAGAGATGGAGAGACAACAAGTGGCTATGGCTGATTTGAAGATAGTGGAATTGGCTAAGCTATCATGTAGAGCAATGAAAGGTGATGCAAAGATTGATGGGTTGGTTAGTGTTGCTTTGAATGGTGTTTTTGCTGGTTTGGAGAAAGTTATGAAAACTTCTGATTGTGCTAGACTTAAGACACTTAAAGGGGTTTTAGATGTTTTAAGTCCAATTCAGTGTGTTGATTTTTTAGCTGCACATATTGGTATGCAGTTGAGGTTGAGGCAATTTGGGATGAAGATGATTACTGGATCTAATTGA 696 0.3664 MKNPVVEKFSEFYEKWVLKLEEIHHELIEVSKRKTELMMMNNEQELQILVSKVTTHLKEYYTVKWGAAHEDVVVFFTPTWLSPLENAYLWVTGWKPSSIFRMLERFDITDEQRKEIEKLRVKIKMEEEKVEREMERQQVAMADLKIVELAKLSCRAMKGDAKIDGLVSVALNGVFAGLEKVMKTSDCARLKTLKGVLDVLSPIQCVDFLAAHIGMQLRLRQFGMKMITGSN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00680 231 Pfam Seed dormancy control 35 104 IPR025422 GO:0006351|GO:0043565
Trre4g00680 231 ProSiteProfiles DOG1 domain profile. 6 229 IPR025422 GO:0006351|GO:0043565
Trre4g00680 231 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 7 226 - -
Trre4g00680 231 Coils Coil 109 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00680 Trre-Chr4 4893690 4894385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00680 9 220 bZIP Transcription Factor Family AT3G12250 27.103 3.49e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00680 - - psat:127115880 338.576