Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00679 ATGAGATGTAACACATTTAGATTTTGGTTTAGAATTTATATTTGCTTCATTACTGTTTGGGGAATTCATGGGTGTTGGTCGCTTAATGATGAAGGATTGGCTTTGTTAGAGTTTCGTGCAAGAGTAACATGTGATCCTCATGCTGCTTTGGAAAATTGGGATCCAAATGATTGTGACCCTTGTAACTGGGTTGGGGTCCACTGTGTCGATGGTAAAGTGCAGATGCTGGACCTAAATGGACTATCCTTGGAAGGGACATTGGCTCCAGAACTTGGGAAACTTAATAACTTAAAATCTCTTGTGTTATGCAATAATAACTTTTCTGGTGAAATTCCTAAAGAACTTGGAGATTTAGTTGAGTTAGAGTTATTGGATTTAAGGGAAAATAACTTGTCAAGAAGCATCCCAACAGAGCTTAGTAGGATGTTATCCCTAAAACACTTGTTGCTTTGTTATAACAAAGTAGAAGATAGTGATTCTCAAGATCAAGGAAATTTCAGATTTTTCTCTAAATCACTACTTGATGAGTGTTCATCACCTTTGACATCATTATTTGCTTGCATCAATAGAAAGTTTGGTCACTGGTTCAAGCAAGGCCAGGAAGAGAAATGTTTCGACCTTCAGCCTCGTTCTAATGAGGCAGAGATTGAGATGAATGTGCCGAATCTTGTCAATTACGCGCGTCGTAGGTTACTTGATCAATCTAGTAACCTTGCAGCTGTACCTTATAATGGAGAACAAACAACAGATATCAGTTATATTCCAATTAGCATTTGTAGTGGATCTTTTCCAGCTGTTCCAGATGCAACTAAGAAACAAAATCAGTCACAAACACCACCATTGCCTTCTCCTCCTGCCGAGCCTTCTCCTCCTACCGAACCTTCACAAGACGGAAAACAAACAAGCGAAGAACATCCGAAAACTTCCGGAAATTTGTGGAAGTATATACTAATTATCGTAGCTGCGGTTGTATTGGTCATTGTGATCATAGTTCTTCTTTGCATTTGTAGAAAACCAGCAGCTAAAATAATTAAGCCTTGGAATACAGGCATAAGTGGACAGTTGCAAAAAGCTTTTGTAACAGGGGTTCCTAAGTTGAATAGAGCAGAACTAGAGACAGCTTGTGAAGATTTCAGCAATATTGTTACTAATTTTGAAGCATGCACTGTATACAAAGGAACATTGTCTAGTGGAGTTGAAATTGCTGTTGTTTCTACTTTAGTTAATTCTTCTCAAGATTGGAGTAAGAGCATGGAATTGAACTACAGAAGAAAGATTGCCACATTGTCCCGGATTAACCATAAGAACTTTGTTAATCTTATTGGATACTGTGAGGAAGAAGAACCATTTTCAAGGATGTTTATATTAGAATATGCCCCAAATGGAAGTCTATTTGAGCACCTACATGTTAAAGAAATTGAAGGTCTTGAATGGAATGAAAGGATAAGAATCATAATGGGTACTGCTTATTGTCTTCAGTACATACACCATGATTTAAATCCACCAATAGCACATAGCAAAGTTAATTCAAAGTTGATCATGTTGACAGATGATTATGCTGCAAAGCTTGCTGAGGTTACTTTTAGAAGTATTGCCGAATCAGCTAAGCCAACTAGAGGCGACTCAAAGAAATCTGAGATGACGCGTGCTGCTCTCGATAACAATGTCTATGATTTTGGAATATTATTGCTTGAAATCATTTCTGGGAAATTGCCTCAATCTGAAGAACAAGGAAATCTTGTCAATTGGGCTGCTGATTACATAAATGACAAGAGAAGCATAGGTTATATGATTGATCCAAGTTTGAAATCATTCAAAGACAATGAACTTGATGTAATTTGTGAAGTGATTCAATCATGTATTCAACCTGATCCAAAGTTAAGGCCTACAATGAGAGACATAACTTCAAAATTAAGGGAAGTTCTTGGTGTGACACCTGAACAAGCTGTTCCAAGACTTTCTCCACTATGGTGGGCTGAACTTGAGATATTATCAGTGGAAGCTACTTAA 2010 0.3751 MRCNTFRFWFRIYICFITVWGIHGCWSLNDEGLALLEFRARVTCDPHAALENWDPNDCDPCNWVGVHCVDGKVQMLDLNGLSLEGTLAPELGKLNNLKSLVLCNNNFSGEIPKELGDLVELELLDLRENNLSRSIPTELSRMLSLKHLLLCYNKVEDSDSQDQGNFRFFSKSLLDECSSPLTSLFACINRKFGHWFKQGQEEKCFDLQPRSNEAEIEMNVPNLVNYARRRLLDQSSNLAAVPYNGEQTTDISYIPISICSGSFPAVPDATKKQNQSQTPPLPSPPAEPSPPTEPSQDGKQTSEEHPKTSGNLWKYILIIVAAVVLVIVIIVLLCICRKPAAKIIKPWNTGISGQLQKAFVTGVPKLNRAELETACEDFSNIVTNFEACTVYKGTLSSGVEIAVVSTLVNSSQDWSKSMELNYRRKIATLSRINHKNFVNLIGYCEEEEPFSRMFILEYAPNGSLFEHLHVKEIEGLEWNERIRIIMGTAYCLQYIHHDLNPPIAHSKVNSKLIMLTDDYAAKLAEVTFRSIAESAKPTRGDSKKSEMTRAALDNNVYDFGILLLEIISGKLPQSEEQGNLVNWAADYINDKRSIGYMIDPSLKSFKDNELDVICEVIQSCIQPDPKLRPTMRDITSKLREVLGVTPEQAVPRLSPLWWAELEILSVEAT 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00679 669 MobiDBLite consensus disorder prediction 267 306 - -
Trre4g00679 669 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Trre4g00679 669 ProSiteProfiles Protein kinase domain profile. 341 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00679 669 MobiDBLite consensus disorder prediction 278 292 - -
Trre4g00679 669 Gene3D Phosphorylase Kinase; domain 1 352 458 - -
Trre4g00679 669 Pfam Protein tyrosine and serine/threonine kinase 389 638 IPR001245 GO:0004672|GO:0006468
Trre4g00679 669 FunFam Nuclear pore complex protein NUP107 28 176 - -
Trre4g00679 669 SUPERFAMILY L domain-like 28 163 - -
Trre4g00679 669 SUPERFAMILY Protein kinase-like (PK-like) 388 638 IPR011009 -
Trre4g00679 669 Gene3D Transferase(Phosphotransferase) domain 1 459 649 - -
Trre4g00679 669 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Trre4g00679 669 PANTHER PROTEIN MALE DISCOVERER 2 11 667 - -
Trre4g00679 669 FunFam Inactive receptor-like serine/threonine-protein kinase 350 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00679 Trre-Chr4 4882980 4887308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00679 25 643 Receptor kinase-like Gene Family AT2G42290 25.664 2.67e-46 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trre4g00679 PK_Tyr_Ser-Thr 6.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00679 - - adu:107468254 819.305