Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00678 ATGGGAATGAGATGTAACACATTTAGATTTTGGTTTAGAATTTATATTTGCTTCATTACTGTTTGGGGAATTCATGGGTGTTGGTCGCTTAATGATGAAGGATTGGCTTTGTTAGAGTTTCGTGCAAGAGTAACATGTGATCCTCATGCTGCTTTGGAAAATTGGGATCCAAATGATTGTGACCCTTGTAACTGGGTTGGGGTCCACTGTGTCGATGGTAAAGTGCAGATGCTGGACCTAAATGGACTATCCTTGGAAGGGACATTGGCTCCAGAACTTGGGAAACTTAATAACTTAAAATCTCTTGTGTTATGCAATAATAACTTTTCTGGTGAAATTCCTAAAGAACTTGGAGATTTAGTTGAGTTAGAGTTATTGGATTTAAGGGAAAATAACTTGTCAAGAAGCATCCCAACAGAGCTTAGTAGGATGTTATCCCTAAAACACTTGTTGCTTTGTTATAACAAAGTAGAAGATAGTGATTCTCAAGATCAAGGAAATTTCAGATTTTTCTCTAAATCACTACTTGATGAGTGTTCATCACCTTTGACATCATTATTTGCTTGCATCAATAGAAAGTTTGGTCACTGGTTCAAGCAAGGCCAGGAAGAGAAATGTTTCGACCTTCAGCCTCGTTCTAATGAGGCAGAGATTGAGATGAATGTGCCGAATCTTGTCAATTACGCGCGTCGTAGGTTACTTGATCAATCTAGTAACCTTGCAGCTGTACCTTATAATGGAGAACAAACAACAGATATCAGTTATATTCCAATTAGCATTTGTAGTGGATCTTTTCCAGCTGTTCCAGATGCAACTAAGAAACAAAATCAGTCACAAACACCACCATTGCCTTCTCCTCCTGCCGAGCCTTCTCCTCCTACCGAACCTTCACAAGACGGAAAACAAACAAGCGAAGAACATCCGAAAACTTCCGGAAATTTGTGGAAGTATATACTAATTATCGTAGCTGCGGTTGTATTGGTCATTGTGATCATAGTTCTTCTTTGCATTTGTAGAAAACCAGCAGCTAAAATAATTAAGCCTTGGAATACAGGCATAAGTGGACAGTTGCAAAAAGCTTTTGTAACAGGGGTTCCTAAGTTGAATAGAGCAGAACTAGAGACAGCTTGTGAAGATTTCAGCAATATTGTTACTAATTTTGAAGCATGCACTGTATACAAAGGAACATTGTCTAGTGGAGTTGAAATTGCTGTTGTTTCTACTTTAGTTAATTCTTCTCAAGATTGGAGTAAGAGCATGGAATTGAACTACAGAAGAAAGATTGCCACATTGTCCCGGATTAACCATAAGAACTTTGTTAATCTTATTGGATACTGTGAGGAAGAAGAACCATTTTCAAGGATGTTTATATTAGAATATGCCCCAAATGGAAGTCTATTTGAGCACCTACATGTTAAAGAAATTGAAGGTCTTGAATGGAATGAAAGGATAAGAATCATAATGGGTACTGCTTATTGTCTTCAGTACATACACCATGATTTAAATCCACCAATAGCACATAGCAAAGTTAATTCAAAGTTGATCATGTTGACAGATGATTATGCTGCAAAGCTTGCTGAGGTTACTTTTAGAAGTATTGCCGAATCAGCTAAGCCAACTAGAGGCGACTCAAAGAAATCTGAGATGACGCGTGCTGCTCTCGATAACAATGTCTATGATTTTGGAATATTATTGCTTGAAATCATTTCTGGGAAATTGCCTCAATCTGAAGAACAAGGAAATCTTGTCAATTGGGCTGCTGATTACATAAATGACAAGAGAAGCATAGGTTATATGATTGATCCAAGTTTGAAATCATTCAAAGACAATGAACTTGATGTAATTTGTGAAGTGATTCAATCATGTATTCAACCTGATCCAAAGTTAAGGCCTACAATGAGAGACATAACTTCAAAATTAAGGGAAGTTCTTGGTGTGACACCTGAACAAGCTGTTCCAAGACTTTCTCCACTATGGTGGGCTGAACTTGAGATATTATCAGTGGAAGCTACTTAA 2016 0.3755 MGMRCNTFRFWFRIYICFITVWGIHGCWSLNDEGLALLEFRARVTCDPHAALENWDPNDCDPCNWVGVHCVDGKVQMLDLNGLSLEGTLAPELGKLNNLKSLVLCNNNFSGEIPKELGDLVELELLDLRENNLSRSIPTELSRMLSLKHLLLCYNKVEDSDSQDQGNFRFFSKSLLDECSSPLTSLFACINRKFGHWFKQGQEEKCFDLQPRSNEAEIEMNVPNLVNYARRRLLDQSSNLAAVPYNGEQTTDISYIPISICSGSFPAVPDATKKQNQSQTPPLPSPPAEPSPPTEPSQDGKQTSEEHPKTSGNLWKYILIIVAAVVLVIVIIVLLCICRKPAAKIIKPWNTGISGQLQKAFVTGVPKLNRAELETACEDFSNIVTNFEACTVYKGTLSSGVEIAVVSTLVNSSQDWSKSMELNYRRKIATLSRINHKNFVNLIGYCEEEEPFSRMFILEYAPNGSLFEHLHVKEIEGLEWNERIRIIMGTAYCLQYIHHDLNPPIAHSKVNSKLIMLTDDYAAKLAEVTFRSIAESAKPTRGDSKKSEMTRAALDNNVYDFGILLLEIISGKLPQSEEQGNLVNWAADYINDKRSIGYMIDPSLKSFKDNELDVICEVIQSCIQPDPKLRPTMRDITSKLREVLGVTPEQAVPRLSPLWWAELEILSVEAT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00678 671 Pfam Protein tyrosine and serine/threonine kinase 391 640 IPR001245 GO:0004672|GO:0006468
Trre4g00678 671 FunFam Inactive receptor-like serine/threonine-protein kinase 352 460 - -
Trre4g00678 671 SUPERFAMILY L domain-like 30 165 - -
Trre4g00678 671 Gene3D Phosphorylase Kinase; domain 1 354 460 - -
Trre4g00678 671 Gene3D Transferase(Phosphotransferase) domain 1 461 651 - -
Trre4g00678 671 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Trre4g00678 671 SUPERFAMILY Protein kinase-like (PK-like) 390 640 IPR011009 -
Trre4g00678 671 MobiDBLite consensus disorder prediction 269 308 - -
Trre4g00678 671 PANTHER PROTEIN MALE DISCOVERER 2 13 669 - -
Trre4g00678 671 MobiDBLite consensus disorder prediction 280 294 - -
Trre4g00678 671 ProSiteProfiles Protein kinase domain profile. 343 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00678 671 FunFam Nuclear pore complex protein NUP107 30 178 - -
Trre4g00678 671 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00678 Trre-Chr4 4882974 4887308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00678 27 645 Receptor kinase-like Gene Family AT2G42290 25.664 2.46e-46 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trre4g00678 PK_Tyr_Ser-Thr 6.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00678 - - adu:107468254 823.542