Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00669 ATGCCGGATTTTCACGATTCTCTCTCTCCACCACCACCGCCGTCGTCTCGCCCTATCCCCGTTCGCGAGGATTGTTGGTCAGAAGAAGCTTCTTCTACTCTCGTTGATGCATGGGGTCGTCGTTATCTCGAACTCAACCGTGGTAATCTTCGTCAGAAAGATTGGCAAGATGTTGCTGATGCTGTTAACGCTCTTCATGGTCATACTAAGAAAACTCATCGCACCGATGTTCAGTGTAAGAATCGAATTGATACGATTAAGAAAAAGTATAAGATCGAGAAAGCTAGGGTTTCCAATTCCAATGGTGTTTTTTCTTCGACTTGGCCTTTTTATGAACGTTTGGATGTTTTGATTGGTCCTAATTTCAATACGAAGAAATCTACATCTTCTCCATCACCATCTCCGCCCGTTGCTCTTCCGTTGGTTCCTCATCGGAAATTTCCTAATTTGTCGTCTGCGATTACCGTTGCTCCTACTGCTGTTGCTCTTCCGCAGAAGAGGCCACTTGCTACGGTGATGGATGATGGTTATTTTAGGAGGAATTATTCTGCGGTGGCTGCCGCAGCTGCTGCTGCGGAGGCTGATGAAGATGAGGAGGAGGATGAAGAGGAGGAAGTTGAGGAGGAGGAGGTGGAGGTTGAGGAGGAAGAAGGAAGGGGAAGTGAAGTGGATGAAGGGGATAAAGGGAGGGAAGGGATGAAGAGGTTGGCTAAAGCTATTGAGAAATTTGGTGAAATGTATGAGAGAGTTGAGGGACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAAAGGATGGAGTTTGCTAAAGATATTGAAGTGCAAAGGATGCAGATGTTAATGGATACACAAGTTCAGCTGGAGAGAATCAAGCGTGGGAAACGATCTGGGTCTAATGATATGTATAGCTAG 912 0.4594 MPDFHDSLSPPPPPSSRPIPVREDCWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVNALHGHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSNSNGVFSSTWPFYERLDVLIGPNFNTKKSTSSPSPSPPVALPLVPHRKFPNLSSAITVAPTAVALPQKRPLATVMDDGYFRRNYSAVAAAAAAAEADEDEEEDEEEEVEEEEVEVEEEEGRGSEVDEGDKGREGMKRLAKAIEKFGEMYERVEGQKLRQMVDLEKQRMEFAKDIEVQRMQMLMDTQVQLERIKRGKRSGSNDMYS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00669 303 MobiDBLite consensus disorder prediction 1 21 - -
Trre4g00669 303 MobiDBLite consensus disorder prediction 189 232 - -
Trre4g00669 303 Pfam Myb/SANT-like DNA-binding domain 23 116 IPR044822 -
Trre4g00669 303 Coils Coil 185 219 - -
Trre4g00669 303 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 294 IPR044823 -
Trre4g00669 303 Gene3D - 26 92 - -
Trre4g00669 303 MobiDBLite consensus disorder prediction 192 221 - -
Trre4g00669 303 MobiDBLite consensus disorder prediction 1 19 - -
Trre4g00669 303 FunFam trihelix transcription factor ASIL2 26 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00669 Trre-Chr4 4827881 4832686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00669 226 302 Trihelix Transcription Factor Family AT3G14180 45.679 6.88e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre4g00669 Myb_DNA-bind_4 1.9e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00669 - - gmx:100815241 444.121