Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00657 ATGGATTTTAGCTCAGATATTTCGAGGGTAGTTTTCAATGCCACTTCATATAGCTTTGGTGCTTCAAATGTGATTTCAAGAGGTGGATTTGTATCATCAAACTCATTGGTTTTGGATAGTGAGAAAGGAGAACTAGTGAAGTCTCCTCCAATAATTGGAGACAAAAAGATGTGTGATGCTAACAAAACTTTAGTGGCTTTGAAGAATCATAGAGAAGCAGAGAGGAGAAGAAGGAACAAAATTAATGGTCATCTTGCTAAACTTCGTGGACTTGTGCCCTCCTCTCCAAAGATGGACAAAGCAACCTTACTAGCAGAAGTAATTAGGCAAGTAAATGAATTGAAAAGCAATGCTAATCAAGCAAGCAAAGGTTATTTAATTCCAATAGATGGTAATGAAGTGAAAGTTGAAGTTGAATCATGTGAAAAGGGTGTAGTAGATGGATCAATTCTTTACAAAGCATCTATCTGCTGTGATTACCAACCAGAACTTTTTTCTGATCTAAAACAAACTCTTGATACCCTTCAACTACAATTGGTAAGGGCAGAATTGTCAACTTTGGGAGACAGGGTTAAGAATGAATTTGTCTACAATTGTTGCAAAGTAGATATTTATAATATTGAGCTATGTCAACTTATTGCAAGTAATGTTCACCAGGCACTGAGTTCTGTATTGGATAAGGCTTCTGCCTCAATGGATTATTCATTAAGGGCACCACATCCTTACAATCAGCTGCAGCAGACATCTACTTTGTCATGCAACCATGATTTTTGCTCTTGTTGA 783 0.3691 MDFSSDISRVVFNATSYSFGASNVISRGGFVSSNSLVLDSEKGELVKSPPIIGDKKMCDANKTLVALKNHREAERRRRNKINGHLAKLRGLVPSSPKMDKATLLAEVIRQVNELKSNANQASKGYLIPIDGNEVKVEVESCEKGVVDGSILYKASICCDYQPELFSDLKQTLDTLQLQLVRAELSTLGDRVKNEFVYNCCKVDIYNIELCQLIASNVHQALSSVLDKASASMDYSLRAPHPYNQLQQTSTLSCNHDFCSC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00657 260 SMART finulus 71 120 IPR011598 GO:0046983
Trre4g00657 260 Gene3D - 65 124 IPR036638 GO:0046983
Trre4g00657 260 Pfam Helix-loop-helix DNA-binding domain 69 114 IPR011598 GO:0046983
Trre4g00657 260 Coils Coil 104 124 - -
Trre4g00657 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Trre4g00657 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 122 IPR036638 GO:0046983
Trre4g00657 260 Coils Coil 165 185 - -
Trre4g00657 260 PANTHER TRANSCRIPTION FACTOR BHLH30 27 231 IPR045847 GO:0003700|GO:0006355
Trre4g00657 260 CDD ACT_UUR-ACR-like 155 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00657 Trre-Chr4 4697907 4700487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00657 68 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.077 3.35e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre4g00657 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00657 - - mtr:11425915 306.605