Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00656 ATGTCAACTCCTTCACCTTCATCATCTTCTTCTTCTTCTATTTGGGTTTTGTCTAACATAAAACTTCAATTCTTTACTCGTATCAGACGGTTTCTTCAATCAAAAGCAACCCGAAAGCGCTGTGATGCTTCCAATTGTTTAAACAGAGAAGAAAATACTCAAAACAGAGATGAACAGAACAAGGTTGTAAAGATTGAAACAATTGAAGCTATGGAGAACCATAAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAAACTGAGATTTTACTGCAGAAGACGGTGAAAATGCTTCATTTTGGAAACTCGGAAGAGAAGGAAGTAGCTGCAAAAGAGATTGAAAGTTTAGTTAAAGAAGATGTTAAAGTTAGAAAGTTGATAACTGAACTTGGGGTGGTTCCGGTTTTGGTATCCATGGTGGCGTCGCAGGTGGCTAGTCGCCGGAGTGCAGGGTTGACGGCGTTGATTCACCTTGCTGATGGAACTTACACGAACAAGGCTTTGATAGTGGGGGCAGGAATATTATCCAATCTACCAAAGAAAATTGACCTTATAGATGAGTCAACCATGAATGAGTTTGCAGAGTTACTTTTATCATTATCATCACTTGCAAATACCCAATTCCCTTTTGCTTCATTAGATTTTATTCCATTTCTTAAAGACATTCTTGAAAAAGAGACAACTTTTGATACCAAAAGATCATGTTTAGGAGCCTTATACAACCTATCAACAATGTTAGAAAATGCAAGCTCTTTGGTTTCTTATGGTCTTGTCCCAATTTTATTGGAACTTTCTTTAGTAAAAGAAATTTCAGAAAAAGCACTTGCTACTTTAGGTAACTTGCTGGTTACTCTAATGGGAAAAAAAGCAATAGAAAATAGTTCAATGGTGCCACAAAATTTTGTAGAGATTTTGTCATGGGAAGATAAACCAAAATGTCAAGAGTTGTCTGTTTATATTTTGATGATTTTAGCACATCAAAGTATATCACAAAGAGAGAAAATGGCACAAGCTAGGATTGTTCCTATGCTTCTTGAAGTTGTTTTATTGGGGAGTCCTTTAGCTCAAAAGAGAGCAATGAAATTGTTGCAATGGTTTAAGGATGAAAGGCAAATTAAGATGGGACCACATTCTGGTCCACAATCACCAAGATTTGCAATGGGGTCACCTTTGAATCAAAGAGATACAAAAGAAGGGAAGAACATGATGAAGAGTTTGGTAAAACAAAGCTTGCATAAGAATTTGGAAATAATAACTCAAAGGGCAAATGCAAATGGGGAGTCTTCCAAACTCAAATCATTGGTTATTAGCACAAGTTCCAAGAGTTTGCCTTATTGA 1335 0.3708 MSTPSPSSSSSSSIWVLSNIKLQFFTRIRRFLQSKATRKRCDASNCLNREENTQNRDEQNKVVKIETIEAMENHKEEEEEEEVEETEILLQKTVKMLHFGNSEEKEVAAKEIESLVKEDVKVRKLITELGVVPVLVSMVASQVASRRSAGLTALIHLADGTYTNKALIVGAGILSNLPKKIDLIDESTMNEFAELLLSLSSLANTQFPFASLDFIPFLKDILEKETTFDTKRSCLGALYNLSTMLENASSLVSYGLVPILLELSLVKEISEKALATLGNLLVTLMGKKAIENSSMVPQNFVEILSWEDKPKCQELSVYILMILAHQSISQREKMAQARIVPMLLEVVLLGSPLAQKRAMKLLQWFKDERQIKMGPHSGPQSPRFAMGSPLNQRDTKEGKNMMKSLVKQSLHKNLEIITQRANANGESSKLKSLVISTSSKSLPY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00656 444 SUPERFAMILY ARM repeat 91 364 IPR016024 -
Trre4g00656 444 Coils Coil 61 96 - -
Trre4g00656 444 Gene3D - 47 423 IPR011989 -
Trre4g00656 444 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 444 - -
Trre4g00656 444 MobiDBLite consensus disorder prediction 372 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00656 Trre-Chr4 4677574 4681800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00656 103 391 U-box Gene Family AT1G67530 29.470 6.26e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00656 - - gmx:100813828 633.254