Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00618 ATGAATTTTTATGCTCAAACATCAAACTCAGTTCCAAATATTTTGCTTTGTCTTCCTCTAATAATCATCATGCTTTTCCTATTCCATTGTCATGCAAATAGTCCCCCAAATACAACAAGTATTGGTGTGATCATTGATGTTAATTCTGAAACAGGGAAACAACAGAGAACAGCCATACAAATTGCAGCTCAAAGTTTCAATAATTATTCCAACAATCAAAACATAATCCTTTTCTTCCGTGACTCTTGTGGAAACCCTTTACAAGCAGCTTCAGATGCTGAAGAATTAATTACTAAAGAGAAAGTTGAAGTGATTATTGGCATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGATCTTGGAGCCAAGTTTCAAGTACCAACAATATCATTTTCTTCTCCACCGTTTGACTCTTCATCATTAATGCAACTTCGTTGGCCTTTCTTAATTCAAATGGCAAAGAATCATACTGCACAAATGAACTTCATAGCTAATATGATCCACGCTTTCAACTCTCAACAAGTTATCGCTATATACGAGAACAGCCCTTATAGTAGTGATTCTGGGATGTTAAGCCTCTTATCCGAGGCTCTCCAAAAGGTAAACTCACAGATTGAGTATCACTTAGTTCTTCCACCATTCACTTCTTTATCTGATCCAGAAGGGCTTGTTCTTCATGAATTGTTGAAGTTGCTGTCATTAAAATCTCGTGTTTTTATTGTACTTCAAGCATCGTTACCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGATTATTGGAGAAAGATTCATCTTGGATAATCACTGAGGAGATTGCAAGCATGTTGGACTATGTAGATAAACCTGTTTTATCTTCCATGGAAGGTGTTTTGGGAATCAAAACCAACTATTCTACAAGTTCTAGTGCTTATACTCAATTGCAGAAAAACTTTCAAGCTGAATCAAATTTCTTGCTAGCTTATGATAGCATTACAATTGTCACAAAGGCTTTGGAGAAAATGAATACTAATTCTAGTATCTCAAAGATGTTATTGGAGGAAATTTTATCTTCCAATTTCAATGGCTTAATTGGCGACATAAGATTCAAAGAAAGACAACTATCCTACACTCCAATATTAAGCGTCATTAAAGTGGTTGATAATGATAAGAAACATATGGAATTGGACTTTTGGACACCAAAGTCGAAGTTTGCTAGATATCTTAGTGAGAAAACAAGTGATGGAACTATTAAAAGCTTAAATGACTCTGTACATAAGACATGGAAAATACCCACAAAGACAAACCCTTTAAAAGTTGCAATTCCTATTACTCCGGTCTTCCCTATAGATTTTTACCCTTTAAATGCATCTTATGATTCAATTCTGCTTAAAGTCATAGATGAGACCTATGATGCTATTGTAGCAGATATAACAATACTTGCTGACCGATCAAGGAATCTATCATTCACTCAACCATATACTGAGTCAGGCTTATCACTCATGTTTCCTGTTGAAACCGAAGATTCAGCATGGTTGTTTATGAGACCATTTAGCTTGGAAATGTGGATTGCAACTATTGGTATCCTCATCTACACAATGATTATCATTTGGTTCTTGGAACATCGCTTGAATCCTGAATTCGGTGGACCATTGAAAACCCAGATCAGCAACACTCTGTGGTTTGCTTTTTCCTCTCTATTTTCTGTTCATAGGGAGAAAATAAACAGCAACTCAGCAAGAGTAGTAGTTGGAGTATGGTTATTTCTTGTGTTGGTTCTAACCTCAAGCTACACTGCAAATCTTTCATCATTGCTCACTGTCCCAAAATTGAGGTCTGATAGAAACATTGAATGGCTTAAACAAAACAATCTACCAATTGGTTGTGCTAGCACCAGTGCCTTTGTAAGGAACTACTTGATCCAAGTATATAATTTCCCTAGGCAGCAAATTGTCGATGTTGAGAATGAACGTGACTCAATAGTTAAATTCAAGAACAAAAAAATTGCGGCTATCTTTGCTGAGAGCCCATATATGAAGGTTTTCTTGAACAAACACTGCAAAGATTACACTGCAACTACAGCAGCCTATAAATTTGGAGGTTTGGGATTTGCATTTCAAAAAGGAGCTCCAATAGAAAAAGACTTTTCTGAAGCAATTTTAACATTAGCAGAAAATGGAAAACTCAAAGATTTGGAAGACAAATGGTTAACACCTTCCAATCAATGCTCAAACAACTCACCATCTCCACAAACTCAGAGCCTGACCCTTAATAAATTTTGGGGAATCTATTTAATATGTGCTGCCACTTCCACAATCTGCTTATTACTAGCTTCATTGAAGAAGTACTTACATAAAGGAAATGTAATCGCAGAATATGATGATAATAAAGGTAATCAAAATTGGCCTGGACTGGATCGGCCGGTTCAATTGGTTGAGTTAGGAACCGAATATGCATCCGGTCCGATCAACACTTCAAACCGCTATGCATCTGGTCCGATCAACACTTCAAACCGCTATGATTCAAACCGCTATGATACAGAACTGGGTATAAAACCAGTATGA 2547 0.3655 MNFYAQTSNSVPNILLCLPLIIIMLFLFHCHANSPPNTTSIGVIIDVNSETGKQQRTAIQIAAQSFNNYSNNQNIILFFRDSCGNPLQAASDAEELITKEKVEVIIGMETWQEAALVADLGAKFQVPTISFSSPPFDSSSLMQLRWPFLIQMAKNHTAQMNFIANMIHAFNSQQVIAIYENSPYSSDSGMLSLLSEALQKVNSQIEYHLVLPPFTSLSDPEGLVLHELLKLLSLKSRVFIVLQASLPMVNHLFREAKKIGLLEKDSSWIITEEIASMLDYVDKPVLSSMEGVLGIKTNYSTSSSAYTQLQKNFQAESNFLLAYDSITIVTKALEKMNTNSSISKMLLEEILSSNFNGLIGDIRFKERQLSYTPILSVIKVVDNDKKHMELDFWTPKSKFARYLSEKTSDGTIKSLNDSVHKTWKIPTKTNPLKVAIPITPVFPIDFYPLNASYDSILLKVIDETYDAIVADITILADRSRNLSFTQPYTESGLSLMFPVETEDSAWLFMRPFSLEMWIATIGILIYTMIIIWFLEHRLNPEFGGPLKTQISNTLWFAFSSLFSVHREKINSNSARVVVGVWLFLVLVLTSSYTANLSSLLTVPKLRSDRNIEWLKQNNLPIGCASTSAFVRNYLIQVYNFPRQQIVDVENERDSIVKFKNKKIAAIFAESPYMKVFLNKHCKDYTATTAAYKFGGLGFAFQKGAPIEKDFSEAILTLAENGKLKDLEDKWLTPSNQCSNNSPSPQTQSLTLNKFWGIYLICAATSTICLLLASLKKYLHKGNVIAEYDDNKGNQNWPGLDRPVQLVELGTEYASGPINTSNRYASGPINTSNRYDSNRYDTELGIKPV 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00618 848 SUPERFAMILY Periplasmic binding protein-like II 421 732 - -
Trre4g00618 848 Pfam Bacterial extracellular solute-binding proteins, family 3 452 732 IPR001638 -
Trre4g00618 848 Pfam Ligand-gated ion channel 733 763 IPR001320 GO:0015276|GO:0016020
Trre4g00618 848 FunFam Glutamate receptor 159 325 - -
Trre4g00618 848 PIRSF IGluLR_plant 10 445 IPR017103 -
Trre4g00618 848 PIRSF IGluLR_plant 441 809 IPR017103 -
Trre4g00618 848 Gene3D - 37 211 - -
Trre4g00618 848 Gene3D - 505 645 - -
Trre4g00618 848 Gene3D - 226 369 - -
Trre4g00618 848 SMART GluR_14 422 733 IPR001320 GO:0015276|GO:0016020
Trre4g00618 848 SUPERFAMILY Periplasmic binding protein-like I 35 394 IPR028082 -
Trre4g00618 848 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 779 IPR015683 -
Trre4g00618 848 Pfam Receptor family ligand binding region 56 379 IPR001828 -
Trre4g00618 848 Gene3D - 435 504 - -
Trre4g00618 848 Gene3D - 652 738 - -
Trre4g00618 848 FunFam Glutamate receptor 505 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00618 Trre-Chr4 4426931 4431120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00618 30 771 Ion Channels AT2G29120 30.993 1.04e-113 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00618 - - mtr:11441834 1096.26