Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00617 ATGAATTTTTATGCTCAAACTTTGAATTCAGCTCCAAATATTTTGCTTTGGTTTTCTCTAATAATCTCACTTGTCCTTTTCCAATGTGTTGCCAATAGTTCTCAAACTACAAGTGTTGGTGTTATCATTGATGTTAATTCTGAAACAGGGAAACAACAGATAAAAGCCATGCAACTTGCAGCTCAAAGTTTCAATAATTATTCCAACAATCAAAACATGATTCTTTTCTTCCGCGACTCTAGTAGAAACCCTTTACAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAAGAGAAAGTTAAAGTGATTATTGGCATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGACCTTGGAGCAAAGTTTCAAGTGCCTACAATTTCATTTTCTTCTCCTCCATTAGTCCCTTCATCATCAATGCAACTTCGTTGGCCTTTCTTGATTCAAATGGCACAAAATCATTCCGCACAAATGAAATTCATAGCTGATATGATCCATGCTTTCAACTCTAAAAAAGTTATAGCTATATATGAAGACAACACTTATAGTAGTGATTCAGGAATGTTAAGCCTCTTATCTGAGGCTCTCGAAAAGGTTAACTCGCAAATTGAGTATCGATTAGTTCTTCCGCCGTTCACTTCTTTGCCTGATCCAAAAGGGTTTGTTCTTGATGAATTATTGAAGTTATTGCCGTTAAAATCTCGTGTTTTTATCGTACTTCAAGCATCGTTACCTATGGTGAACCATTTGTTTAGAGAAGCTAAGAAAATTGGACTATTGGAGAAAGATTCATCTTGGATAATCAATGAGGAGATTACAAGCAAGTTGGACTATGTAGATAAATCTGTTTTATTTTCAATGGAGGGTGTTTTGGGAATCAAAACCACTTATTCTACTAGCTCTAGTGCTTATACTCAACTGTGTGAAAATTTGCAAGTTGAGCATACAGAAAAAGTTGAGTCCAAACTAGGATCAAAGGTTTTGCTAGCTTATGATAGCATTTCAATTGTCACAAAGGCTTTGGAGAAAATGAATACTAATTCTAGTAGCTCAAAAATGTTATTGGAAGAAATGTTATCTTCGAATTTCAATGGCTTAATTGGTGATATAAGATTCAGAGAAAGACAACTATCCTACACTCCAATATTAAGAGTAATTAAAGTTGTTGATAATGATAATAAATATATTGATATGAACTTTTGGACACCAAAGTTGAAGTTTGCTAGATCTCTTAGTGAGAAAACAAGTGATGGTACTACAGAAACTAAGACATGGAAAGTACCTACAGTTACAAACCCTTTAAAAGTTGCACTTCCTATGAATCCTGCATTTGATAACTTTTTGAAATTCTCTGATAATCAACCACCTACCGGTTTTTGTATTGATCTTTTTAAAGAGATTCGAGAAATTCTGAGTGACCAGTATTCTGGTCTTCCATATAGATTTGACTTCTTCAATGAAACTTATGATATGCTTCTGTTTAAAGTCATAAATGAGTCCTATGATGCTATTGTAGGAGATGTAACAATACTTGCCGAGCGATCAAGGAATGTATCATTCACTCAACCATATACTGAGTCGGGCTTATCACTCATATTTCCTGCAGAAAATGAAGATTCAGCATGGTTGTTTATGAAACCATTTAGTACCGAAATGTGGATTGCAACTGCTGGTATCCTCATCTATACAATGTTTGTCATTTGGTTCGTGGAACATCACTTGAATCCTGAATTTGGCGGACCATTGAAAACTCAGATCAGCACCACTCTGTGGTTTGCTTTTACTTCTCTATTTTTCGCTCATAGGGAAAACATAAGCACCAACACAGCAAGAGTAGTAGTTGCAGTATGGTTTTCTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCAAATCTTTCATCATTACTTACTGTCCAAAAATTGAGGTCAGAGAGAGACATTGAATGGCTTAAACAAACTAAACTACCAGTTGGTTGTGATAACAGCAGTACCTTTTTAAAGGATTACTTGGTCCAAGTGTATAATTTCCCTAGGGACCAAGTTGTAGATGTTGATAATGAACAAGACATTGTAGATAAATTCAAGAGCAAAAAAATTTCTGCTCTTTTTGTTGAGAGCCCATATGAGAAGGTTTTCTTGAATAAATACTGCAAAGATTATACTGGAACTACAGCTGCCTTTAAATTTGGAGGAATGGGATTTGTATTTCAAAAAGGGGCTCCAATAGCAAGAGACTTTTCTGAGGCCATTCTAACACTAGCAGAAAATGGAAGACTAAAAGCCTTGGAAGAGAATTGGTTAACACCTTCCAATAAATGCTCAAACAACTCAGCTTCACCAGAAACTGAGAGTCTGACTCTTGACAAATTTTGGGGACTTTATGTCATATGTGCTGCCACTTCCACCATCTGCTTAGGAATAGCCTTATTGAAGAAGTATTTCCGTAAACATAACCGCTTTGTAGATGAAGCTCATCAACTTCCTCAAAGAGATGTCATCGCCGAATCTGATGATGATAATAATAATAATGATACGAAGAAAGCATTAAGATATGGTAGAGTATTACATAATGGGAATCTCATGACTTTAAATAAATCTGCAACTATTGGAGGAAGTGCAATACAAGGTGTACGTCGTAGAAATTCACCAAGGTTGGAGAGTATTACCATTTCTGATGAACCGGGCAATCCACAACGCGCCCAATCAGCTGTCATAGAAATGATGTAA 2727 0.3594 MNFYAQTLNSAPNILLWFSLIISLVLFQCVANSSQTTSVGVIIDVNSETGKQQIKAMQLAAQSFNNYSNNQNMILFFRDSSRNPLQAASAAEELITKEKVKVIIGMETWQEAALVADLGAKFQVPTISFSSPPLVPSSSMQLRWPFLIQMAQNHSAQMKFIADMIHAFNSKKVIAIYEDNTYSSDSGMLSLLSEALEKVNSQIEYRLVLPPFTSLPDPKGFVLDELLKLLPLKSRVFIVLQASLPMVNHLFREAKKIGLLEKDSSWIINEEITSKLDYVDKSVLFSMEGVLGIKTTYSTSSSAYTQLCENLQVEHTEKVESKLGSKVLLAYDSISIVTKALEKMNTNSSSSKMLLEEMLSSNFNGLIGDIRFRERQLSYTPILRVIKVVDNDNKYIDMNFWTPKLKFARSLSEKTSDGTTETKTWKVPTVTNPLKVALPMNPAFDNFLKFSDNQPPTGFCIDLFKEIREILSDQYSGLPYRFDFFNETYDMLLFKVINESYDAIVGDVTILAERSRNVSFTQPYTESGLSLIFPAENEDSAWLFMKPFSTEMWIATAGILIYTMFVIWFVEHHLNPEFGGPLKTQISTTLWFAFTSLFFAHRENISTNTARVVVAVWFSLVFVLTSSYTANLSSLLTVQKLRSERDIEWLKQTKLPVGCDNSSTFLKDYLVQVYNFPRDQVVDVDNEQDIVDKFKSKKISALFVESPYEKVFLNKYCKDYTGTTAAFKFGGMGFVFQKGAPIARDFSEAILTLAENGRLKALEENWLTPSNKCSNNSASPETESLTLDKFWGLYVICAATSTICLGIALLKKYFRKHNRFVDEAHQLPQRDVIAESDDDNNNNDTKKALRYGRVLHNGNLMTLNKSATIGGSAIQGVRRRNSPRLESITISDEPGNPQRAQSAVIEMM 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00617 908 Pfam Bacterial extracellular solute-binding proteins, family 3 450 768 IPR001638 -
Trre4g00617 908 Gene3D - 542 670 - -
Trre4g00617 908 Pfam Ligand-gated ion channel 769 799 IPR001320 GO:0015276|GO:0016020
Trre4g00617 908 Gene3D - 429 541 - -
Trre4g00617 908 SMART GluR_14 435 769 IPR001320 GO:0015276|GO:0016020
Trre4g00617 908 FunFam Glutamate receptor 157 322 - -
Trre4g00617 908 PIRSF IGluLR_plant 9 904 IPR017103 -
Trre4g00617 908 FunFam Glutamate receptor 541 671 - -
Trre4g00617 908 Gene3D - 45 380 - -
Trre4g00617 908 Pfam Receptor family ligand binding region 55 386 IPR001828 -
Trre4g00617 908 SUPERFAMILY Periplasmic binding protein-like II 423 768 - -
Trre4g00617 908 Gene3D - 153 300 - -
Trre4g00617 908 Gene3D - 671 771 - -
Trre4g00617 908 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 836 IPR015683 -
Trre4g00617 908 SUPERFAMILY Periplasmic binding protein-like I 35 461 IPR028082 -
Trre4g00617 908 MobiDBLite consensus disorder prediction 887 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00617 Trre-Chr4 4411769 4415745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00617 20 822 Ion Channels AT2G29120 31.591 2.94e-122 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00617 - - mtr:11441834 1358.2