Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00616 ATGCATTTTTATGATCAAAATTCAAACTCTTATTCAAATATATTGCTTTGGTTTTCTCTAATAATCTCACTTGTCCTTTTCCATTGTGTTGCCAATAGTTCTCAAACTACAAGTGTTGGTGTTATCATTGATGTTAATTCTGAAACAGGGAAACAACAGATAAAAGCCATGCAACTTGCAGCTAAAAGTTTCAATAATTATTCCAACAATCAAAACATAATTCTTTTCTTCCGTGACTCTAGTAGAAACCCTTTACAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAAGAGAATGTTAAAGTAATTATTGGCATGGAAACATGGCAAGAAGCAGCTCTTGTTGCTGATCTTGGAGCTAAGTTTCAAGTCCCAACAATTTCATTTTCATCTCCACCATTAATCTCTTCATCATTAATGCAACTTCGTTGGCCTTTCTTAATACAAATGGCACAGAATTATTCTGCACAAATGAACTTCATATCTAATATGATCCATGCTTTGAACTCTCAACAAGTTATAGCTATATACGAGAACAACCCTTATAGTACTGATTCTGGAATGTTAAGCCTCTTGTCCGAGGCTCTCGAAAAGGTTAACTCGCAGATTGAGTATCAATTAGTTCTTCCACCATTCACTTCTTTGTCTGATCCAAAAGGGTTTGTTCTTCATGAATTGTTGAAGTTGCTGTCATTAAAATCTCGTGTTTTTATTGTACTTCAAGCATCGTTACCTATGGTGAACCATTTATTTAGAGAAGCTAAGAAAATTGGATTATTGGAGAAAGATTCATCTTGGATAATCAATGAGGAGATTGCAAGCATGTTGGAATATGTAGATAGACCTGTTTTATCTTCCATGGAAGGTGTTTTGGGAATCAAAACCAAGTATACTACAAGTTCTAGTGCTTATACTCAATTGCAGAAAAACTTCCAAGCTGAATCAAATTTCTTGCTAGCTTATGATAGCATTACAATTGTCACAAAGGCTTTGGAGAAAATGAATACTAATTCGAGTATCTCAAAGATGTTATTGGAGGAAATTTTATCTTCCAATTTCAATGGCTTAATTGGCGATATAAGATTCAAAGAAAGACAACTATCCTACACTCCGATATTAAGAGTCATTAAAGTGGTTGATAATGATATGAAACATATGGAATTGGACTTTTGGACAAGTGATGGAACTATTAAAAGCTTAAGTGACTCTGTACATAAGACATGGAAAGTACCTACAAAGACAAACCCTTTAAAAGTTGCAATTCCTATGAATGCTTCATCCGATCACTTTTTGAAAGTCTCGCAAAATCAAACTGCTACTGGTTTTTGTATTGATCTTTTCAATGAGATCCGAGAAATTCTGAGTGACCGGTATTCCGGTCTTCCCTATAGATTTTACCCTTTAATTGGATCTTATGATTCAATTCTGCTTAAAGTCATTGATGAGACCTATAATGCTTTTGTAGCAGATATAACAATACTTGCTGACCGATCAAAGAATCTATCATTTACTCAATCATATACTGAGTCAGGCTTATCACTCATGTTTCCTGTTGAAACTGAAGATTCAGCATGGTTGTTTCTGAAACCATTTAGATGGGAAATGTGGATTGCAACTATTGGTATCCTCATCTACACAATGATTATCATTTGGTTCTTGGAACATCGCCTGAATCCTGAATTCGGCGGACCATTGAAAACCCAGATCAGCAACAGTCTGTGGTTCGCTTTTTCGTCTCTATTTTCTGTTCATAGGGAGAAAATAAACAGCAACTCAGCAAGAGTAGTAGTTGGAGTATGGTTATTTCTTGTGTTGGTTCTAACCTCAAGCTACACTGCAAATCTTTCATCATTGCTTACTGTCCCAAAATTGAGGTCTGATAGAAACATTGAATGGCTTAAACAAAACAATCTACCAATTGGTTGTGGTAGCACCAGTGCCTTTATAAGGAACTACTTGTTCCAAGTATATAATATCCCTAGGCAGCAAATTGTTGATCTTGAGGATGAAGGTGACTCAATGGTTAAATTCAAGAACAAAAAAATTGCGGCTATCTTTGATGAGAGCCCATATGTGAAGGTTTTCTTGAATAAACACTGCAAAGATTACACTGCAACTACAGCAGCCTATAAATTTGGAGGAATGGGATTTGTATTTCAAAAAGGGGCACCAATAGCAAAAGACTTTTCTGAAGCCATTCTAACACTAGCAGAAAATGGAAGACTAAAAGCTTTGGAAGAGTATTGGTTAACACCTTCTAATGAATGCTCAAACAACTCAGCTTCTCCAGAAACTGAGAGCCTGACCCTTGACAAATTTTGGGGACTCTATGTCATATGTGCTGCCACTTCCACCATCTGCTTAGGACTAGCCTTATTGAAGAATTATTTCCATAAACATAACCACTTTGAAGAGGAAGCTCATCAAATTCCTCAAATAGATGTAATCGCCAAATCTGATGGCGATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTGATTTGAAGAAAGCATATAGATATGGTAGCGGATTACATAATGGGAATCTCAGGATTTTAAATAAATCTGCAACTTTTGGAGGAAGTGTAACACAAGGTGTACGTCGTAGAAATTCGCCAAGGTTGGAGAGTGTAATCATTTCTGATGAACTGCGCAATCCACAACGCGCCCAATCAGCCTCCCAATCAGCTGTCATAGAAATGATGTAA 2727 0.3561 MHFYDQNSNSYSNILLWFSLIISLVLFHCVANSSQTTSVGVIIDVNSETGKQQIKAMQLAAKSFNNYSNNQNIILFFRDSSRNPLQAASAAEELITKENVKVIIGMETWQEAALVADLGAKFQVPTISFSSPPLISSSLMQLRWPFLIQMAQNYSAQMNFISNMIHALNSQQVIAIYENNPYSTDSGMLSLLSEALEKVNSQIEYQLVLPPFTSLSDPKGFVLHELLKLLSLKSRVFIVLQASLPMVNHLFREAKKIGLLEKDSSWIINEEIASMLEYVDRPVLSSMEGVLGIKTKYTTSSSAYTQLQKNFQAESNFLLAYDSITIVTKALEKMNTNSSISKMLLEEILSSNFNGLIGDIRFKERQLSYTPILRVIKVVDNDMKHMELDFWTSDGTIKSLSDSVHKTWKVPTKTNPLKVAIPMNASSDHFLKVSQNQTATGFCIDLFNEIREILSDRYSGLPYRFYPLIGSYDSILLKVIDETYNAFVADITILADRSKNLSFTQSYTESGLSLMFPVETEDSAWLFLKPFRWEMWIATIGILIYTMIIIWFLEHRLNPEFGGPLKTQISNSLWFAFSSLFSVHREKINSNSARVVVGVWLFLVLVLTSSYTANLSSLLTVPKLRSDRNIEWLKQNNLPIGCGSTSAFIRNYLFQVYNIPRQQIVDLEDEGDSMVKFKNKKIAAIFDESPYVKVFLNKHCKDYTATTAAYKFGGMGFVFQKGAPIAKDFSEAILTLAENGRLKALEEYWLTPSNECSNNSASPETESLTLDKFWGLYVICAATSTICLGLALLKNYFHKHNHFEEEAHQIPQIDVIAKSDGDNNNNNNNNNNNNNNNNSDLKKAYRYGSGLHNGNLRILNKSATFGGSVTQGVRRRNSPRLESVIISDELRNPQRAQSASQSAVIEMM 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00616 908 Gene3D - 233 367 - -
Trre4g00616 908 Pfam Bacterial extracellular solute-binding proteins, family 3 435 751 IPR001638 -
Trre4g00616 908 SUPERFAMILY Periplasmic binding protein-like II 404 751 - -
Trre4g00616 908 SUPERFAMILY Periplasmic binding protein-like I 35 382 IPR028082 -
Trre4g00616 908 Gene3D - 659 754 - -
Trre4g00616 908 FunFam Glutamate receptor 157 323 - -
Trre4g00616 908 Gene3D - 34 214 - -
Trre4g00616 908 Gene3D - 525 658 - -
Trre4g00616 908 MobiDBLite consensus disorder prediction 817 845 - -
Trre4g00616 908 Pfam Receptor family ligand binding region 55 376 IPR001828 -
Trre4g00616 908 FunFam Glutamate receptor 524 654 - -
Trre4g00616 908 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 828 IPR015683 -
Trre4g00616 908 MobiDBLite consensus disorder prediction 818 843 - -
Trre4g00616 908 SMART GluR_14 418 752 IPR001320 GO:0015276|GO:0016020
Trre4g00616 908 Pfam Ligand-gated ion channel 752 782 IPR001320 GO:0015276|GO:0016020
Trre4g00616 908 PIRSF IGluLR_plant 9 405 IPR017103 -
Trre4g00616 908 PIRSF IGluLR_plant 400 850 IPR017103 -
Trre4g00616 908 Gene3D - 411 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00616 Trre-Chr4 4401875 4406176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00616 20 802 Ion Channels AT2G29120 31.103 2.16e-116 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00616 - - mtr:11441834 1261.9