Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00615 ATGCATTACCCTTCAACTATTCCTCAAGTACTTACAAGAATTTGTCTATTATTTTTCTTACTCATCCCTTTTGTTCTCATTCACGGTATCGGAGACGAGACCATAAATTTAGATAAAAAAGTTATATCGATTGGTGTGATCGTTGATGAAGATTCTCGTATCGGGAAAGAACAAGAAGTAGCCTTGGACATAGCAGCCAAGAGTTACAACAACACTTCAAAGAACCATAAGTTGGCTCTCTATTTTCGGAACTCCACCAAGGATACCCTCAGAGCCATCACACTTGCTGAAGAGATGATTAATGTGCAAAAGGTGCAAGTGATTATAGGGATGCACACATGGCCGGAAGCAGCTATAGTGGCTGAAATAGGAAGAAAAGCTCAAGTTCCTATCATATCCTTTGCAGCACCTACCATAACCCCACCGTTGATGAAAGCTCGATGGCCTTTTCTAGTGAGGCTAGCTAACAATGGTACAGCATATATAAATTGTATTGCAGAAATAGTGCAGGCTTATAACTGGAAGAGAGTAGTAGTAATCTACGAAGATGACGGTTACGGTGGAGATTATGGGATGCTATCCCTACTAACTGAGGCACTTCAGGATGTGGATTCAATGATAGAGCGCTGGTTAGCCCTTCCCCCAATTTCTTCTCTACATGATCCAGGAGAGCTAGTTAGTGAAGAGATGCTTAAGTTAAAACAAACACAATCTCGGGTTTTCATAGTGCTGCAATCATCATTAGAAATGGCAATTCATGTGTTCAAAGAAGCTTCAAAAGTTGGACTAGTGGATGCAGAATCAGTTTGGATAATCCCAGAGAGCATAACTAATTTGCTGGATTCTGTCAATAAGTCTGCTATTTCCTATATGGAAGGAGCTTTAGGAATTAAAAACTACTACTCAGAAAGAAGCAAGGAGTATCAAGAATTTGAGGCTCAGTTCCGGAAAACATTTTCGTTAAAGAATCCTGAAGAAGATAACCGATACCCCGGATTTTATGCTCTACAAGCATATGATAGCATTAACATTGTAACTCAAGCAATCAACAGAATGACCAGTGTGAATAATAGCAGCAGCTCAAAGACTTTACTAAGAGAAATACTGTCTAGCAATTTCCTCGGTTTAAGTGTCCATATTCAACTCGAAGCCGGACAACTAATGCAGAAGAATCGCGTCTTAAGAATTGTAAATGTGGCTGGGAAGAGTTACAAGGAATTATGCTTTTGGACTCAACAACGCGGCTTCACTAAAATACTCCATGCCGGACAAAGTGGAAGTATGGTTGCTAGAAGTACAGAATGTTTCAGGGGTGTACGGTGGCCTGGGAATTTGGACCGCGATCCGAAGGGCTGGAACATGCCTACCAAAACAAATCCATTGAAAATTGCAGTCAGAAGTAGAACCTCCTTTTCCAGATTTGTCAAGGTTGAGAATGGCCAGAATCAAATGCCAGATAAATATAGTGGATTCTGCATTGAAATTTTTGAGCATGTACATAAACTTTTGGGATACGATCTGCCATATACTTATTCTCCAATCAATGGAACCTATAACGATTTGGTCCAGCTTGTCTATAACAAGACTTACGACGCAGTTGTTGGGGACATGACCATAATAGAGGAAAGATTGCAGTATGTGGATTTTACAGTACCATATGCAGAATCAGGATTGTCAATGATAGTTCCAATGAAGACTGAAGAATCAGCATGGATGTTTATGAAGCCATTTACCTGGGAATTGTGGTTGGTTACATATGCAATCTTGATTTACACAATGTTAGTTGTTTGGTATCTCGAGCGAGAACCTAACCCCGAGTTTCATGGAAACTGGAAGATCCAACTCAGCACAGCTGTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCATAGAGAAAAAATGCATAGCAACTTAACTCGATTGGTGATGGTGTCGTGGCTCTTTCTTGTATTGATTCTCACCTCAAGCTACACTGCTAGTCTTTCTTCGATGCTCACAATTAAACAGTTGCGACCAAATGTCACGGACATTCAGTGGCTCAAGAACAACGATAAGAAAATTGGTTGTGACGGCGACTCATTTGTTAGGACGTTCTTAGAGAAAGTTGAAAAGTTCAAACCAGAGAATATCATAAACATCACCGATGAATACAAGTACGATGAAGCATTCGCTAATAACAGCATAACAGCTGCATTTTTTGAGCTCCCTTACGAAAAAGTATTCATCAGTGAATACTGCAAGAGATACACCGGCTTCACGCCTAGAAATAGATTTGGAGGATTAGGCTTTATGTTCCAGAAAGGCTCTCCTCTAGCAAGAGACGTTTCGAAAGCTATATTAAATCTTTCGGAAAATGCAGAACTGAAGAGATTGGAAGAAAAGTGGTTAATTTACTCACAAGATTGCTCCAACAACGTGACATCCTCCAACGATATGGGGAGTTTGAATCTTGGAAGCTTATGGGTTCTATATGTCATCTCTTGTGCCACTTCTACTATTTGTCTGCTAATATCAATCATCCAACGTCTAAAATCCAATCATCGACGTGAAAACTTGCCACCAGAAGAAGGCAATGGCACACCAAGTGATGAAAGAGTGTGGAACAAGGTTCTTACATTTGCAAAACAGATTTATAGCAAAAAGCTCGATAATTCGAGTAAGGAACAGGATGTAATCGACTGTTCTTCGAGATCAGGTCATGTGAGCATCGCTGATAGCCCCGAACATTCACAAGAATTCGCTTCTCCGCCAAAAGAGGTACATATGACAAGTTCAAGTGTACATCACATGACATAG 2796 0.4031 MHYPSTIPQVLTRICLLFFLLIPFVLIHGIGDETINLDKKVISIGVIVDEDSRIGKEQEVALDIAAKSYNNTSKNHKLALYFRNSTKDTLRAITLAEEMINVQKVQVIIGMHTWPEAAIVAEIGRKAQVPIISFAAPTITPPLMKARWPFLVRLANNGTAYINCIAEIVQAYNWKRVVVIYEDDGYGGDYGMLSLLTEALQDVDSMIERWLALPPISSLHDPGELVSEEMLKLKQTQSRVFIVLQSSLEMAIHVFKEASKVGLVDAESVWIIPESITNLLDSVNKSAISYMEGALGIKNYYSERSKEYQEFEAQFRKTFSLKNPEEDNRYPGFYALQAYDSINIVTQAINRMTSVNNSSSSKTLLREILSSNFLGLSVHIQLEAGQLMQKNRVLRIVNVAGKSYKELCFWTQQRGFTKILHAGQSGSMVARSTECFRGVRWPGNLDRDPKGWNMPTKTNPLKIAVRSRTSFSRFVKVENGQNQMPDKYSGFCIEIFEHVHKLLGYDLPYTYSPINGTYNDLVQLVYNKTYDAVVGDMTIIEERLQYVDFTVPYAESGLSMIVPMKTEESAWMFMKPFTWELWLVTYAILIYTMLVVWYLEREPNPEFHGNWKIQLSTAVWFTFSSLFFAHREKMHSNLTRLVMVSWLFLVLILTSSYTASLSSMLTIKQLRPNVTDIQWLKNNDKKIGCDGDSFVRTFLEKVEKFKPENIINITDEYKYDEAFANNSITAAFFELPYEKVFISEYCKRYTGFTPRNRFGGLGFMFQKGSPLARDVSKAILNLSENAELKRLEEKWLIYSQDCSNNVTSSNDMGSLNLGSLWVLYVISCATSTICLLISIIQRLKSNHRRENLPPEEGNGTPSDERVWNKVLTFAKQIYSKKLDNSSKEQDVIDCSSRSGHVSIADSPEHSQEFASPPKEVHMTSSSVHHMT 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00615 931 Pfam Receptor family ligand binding region 61 388 IPR001828 -
Trre4g00615 931 FunFam Glutamate receptor 460 571 - -
Trre4g00615 931 FunFam Glutamate receptor 570 708 - -
Trre4g00615 931 CDD PBP1_GABAb_receptor_plant 43 420 IPR044440 -
Trre4g00615 931 Gene3D - 52 389 - -
Trre4g00615 931 CDD GluR_Plant 459 796 - -
Trre4g00615 931 MobiDBLite consensus disorder prediction 917 931 - -
Trre4g00615 931 Gene3D - 570 708 - -
Trre4g00615 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 868 IPR015683 -
Trre4g00615 931 MobiDBLite consensus disorder prediction 897 931 - -
Trre4g00615 931 PIRSF IGluLR_plant 9 930 IPR017103 -
Trre4g00615 931 Gene3D - 709 804 - -
Trre4g00615 931 Gene3D - 462 569 - -
Trre4g00615 931 FunFam Glutamate receptor 762 795 - -
Trre4g00615 931 Pfam Bacterial extracellular solute-binding proteins, family 3 486 796 IPR001638 -
Trre4g00615 931 SUPERFAMILY Periplasmic binding protein-like II 441 797 - -
Trre4g00615 931 FunFam Glutamate receptor 161 329 - -
Trre4g00615 931 SUPERFAMILY Periplasmic binding protein-like I 40 452 IPR028082 -
Trre4g00615 931 Gene3D - 157 413 - -
Trre4g00615 931 Pfam Ligand-gated ion channel 797 829 IPR001320 GO:0015276|GO:0016020
Trre4g00615 931 SMART GluR_14 462 798 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00615 Trre-Chr4 4395570 4398902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00615 8 843 Ion Channels AT2G29120 33.180 1.37e-141 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00615 - - gmx:100818619 1330.08