Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00612 ATGGAGAATATTCACATTCATAATAGTAATAATCATGATGCAACTTCTGAAGGGTCAATTCTTGAGAATGTATGGGCTAAAATTATAAGCAATAATGATGGAAGAAGTACAAATGAAAATGAAGCAGAATGTTCTAACACATGGGAAGAATTGCCTAATCTGGGCGAAAGAGACGGTTCGATAGAAATTCTTCAAAGATTGCCAAGTTTAGGAAGATGGATATCAATGGGAGCTGATTTTTGGGAACAAGTTTTAGATGCTACTATTCTACCTACAACTACTACTACTTCAATAAGTTATACAGATCAAGATTGTAGCAACAAAAATAATGAAATTGAAAGTGTTGATAAATCAAAGAAAAAAGTGGAAAGTGGTGTGAGAAAAGAGAAAAAAATAGGTGAAAAACATTATAGAGGTGTAAGGAGAAGACCATGGGGAAAATATGCAGCTGAGATAAGAGATTCGTCGAAAAAAGGCGCAAGAGTTTGGCTTGGTACATTTGATACAGGTGAAGAAGCTGCTTTAGCTTATGATAAAGCTGCTTTAAGAATTAGAGGTTCAAAAGCATGTCTAAATTTTCCAATTGAGAAAGTTACAAATACAAATGCAAATACAAAGAGAGAAAGTTTATTGGATTCTAAGAAGAGAGGATTAAGGGACAGAGGAGAAGTTGTTGATGTGATGAATATTGAAGAACCTGCAACAAAAAAAATGGCAGGGTTGGAAGATATGTTAGAAAATGATGTTTTTGTATTTCAGGATTTAGGAATTGATTACTTGGACAGTTTGTTGTCTTCTTTTTGA 804 0.3358 MENIHIHNSNNHDATSEGSILENVWAKIISNNDGRSTNENEAECSNTWEELPNLGERDGSIEILQRLPSLGRWISMGADFWEQVLDATILPTTTTTSISYTDQDCSNKNNEIESVDKSKKKVESGVRKEKKIGEKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTGEEAALAYDKAALRIRGSKACLNFPIEKVTNTNANTKRESLLDSKKRGLRDRGEVVDVMNIEEPATKKMAGLEDMLENDVFVFQDLGIDYLDSLLSSF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00612 267 SMART rav1_2 136 200 IPR001471 GO:0003700|GO:0006355
Trre4g00612 267 PANTHER DNA-BINDING DOMAIN 108 219 IPR044808 GO:0003700|GO:0009873
Trre4g00612 267 CDD AP2 135 195 IPR001471 GO:0003700|GO:0006355
Trre4g00612 267 Gene3D AP2/ERF domain 135 196 IPR036955 GO:0003700|GO:0006355
Trre4g00612 267 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Trre4g00612 267 PRINTS Ethylene responsive element binding protein signature 160 176 IPR001471 GO:0003700|GO:0006355
Trre4g00612 267 ProSiteProfiles AP2/ERF domain profile. 136 194 IPR001471 GO:0003700|GO:0006355
Trre4g00612 267 Pfam AP2 domain 136 186 IPR001471 GO:0003700|GO:0006355
Trre4g00612 267 FunFam Ethylene-responsive transcription factor 2 135 196 - -
Trre4g00612 267 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00612 Trre-Chr4 4348734 4349537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00612 17 267 AP2-EREBP Transcription Factor Family AT4G18450 36.508 7.09e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g00612 AP2 4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00612 - - mtr:11443318 391.349