Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00611 ATGGTTTCATTTTCACAATCCCAAACAGAATTACCCTTAAATGAAAATGACTCACAAGACATGGTCATATACCAAATCCTAAACGAAGCTAACAATCTAACAAACACATTTGTGCAACAGAGGAATCACCATCAAGCTCTTAGTTGCTTAGAACCTACAAGGGCTATCACCAAGAAGCATTATAGAGGTGTAAGGCGTCGTCCGTGGGGGAAATATGCCGCGGAGATTCGTGACTCGGCTCGTCATGGGGCAAGAGTATGGCTTGGAACTTTTCAAACAGCTGAAGAAGCTGCTATGGCTTATGATAGAGCTGCTTTCAAAATGAGAGGTTCTAAGGCTTTGCTTAATTTTCCAGCTGAAATTGTTGCTGCAGCTTCTATGGAAATGGAATTTTCAAATTCTAAGCTCAACTTGAATAATAGTAATCATGATTCTGAATCAAGTGGTAGCAGCTGTTGTACTAATTCTAATTCCAATAGGACTTATCAGTTTGAAAGCACAGGGGAGCAAGAAAAGAAAGAAGATCAATTGAATGAGATATAG 543 0.3941 MVSFSQSQTELPLNENDSQDMVIYQILNEANNLTNTFVQQRNHHQALSCLEPTRAITKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEIVAAASMEMEFSNSKLNLNNSNHDSESSGSSCCTNSNSNRTYQFESTGEQEKKEDQLNEI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00611 180 CDD AP2 59 119 IPR001471 GO:0003700|GO:0006355
Trre4g00611 180 PANTHER DNA-BINDING DOMAIN 45 167 IPR044808 GO:0003700|GO:0009873
Trre4g00611 180 MobiDBLite consensus disorder prediction 166 180 - -
Trre4g00611 180 MobiDBLite consensus disorder prediction 138 180 - -
Trre4g00611 180 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Trre4g00611 180 MobiDBLite consensus disorder prediction 138 165 - -
Trre4g00611 180 SUPERFAMILY DNA-binding domain 60 120 IPR016177 GO:0003677
Trre4g00611 180 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Trre4g00611 180 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Trre4g00611 180 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Trre4g00611 180 FunFam Ethylene-responsive transcription factor 2 59 120 - -
Trre4g00611 180 Gene3D AP2/ERF domain 59 120 IPR036955 GO:0003700|GO:0006355
Trre4g00611 180 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00611 Trre-Chr4 4340118 4340660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00611 4 121 AP2-EREBP Transcription Factor Family AT5G47220 49.306 2.97e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g00611 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00611 K13433 - gmx:100811533 206.453