Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00608 ATGGCTTCATCTAACAGACACTGGCCAAGTATGTTTAAGTCTAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAATTCTTCTCTCATTTCTTCTTCTGCTTGCCACAGAACTCCTTACTCAGGTGAGGAAAGAAGTGCTGAACCGAAACCGAGGTGGAATCCGAAACCGGAACAAATCCGGATACTTGAAGCAATCTTCAACTCTGGCATGGTGAATCCACCAAGAGAAGAAATAAGGAAAATCAGAGCACAGTTACAAGAATATGGACAAGTTGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAACATAAGCTTCGACATCTTCAAAACCAGAACTCCAAGAATCAGAACCAGAACCAGAATCAGAATCTGCAGAATCAAGAACATCCACCACAACAAAACAACTCTGTTTCATCACTTTCTCAAATCACTACTGCACCTTCATCTTCATCATCCTCCTCTGAGAAATCACCACCAAAAGAATTAATACCTTCTAAGGTATTTTCTCTTGGTTTCACTAACATCAATGATGTTGTGCCAAATTCTCCAACTGCTTCTGTGAATCAAAACTATTTTCAACCTCAAAATGAAACCAATCTTCTTCCAACACCACAAGTAACTGCACCTACTGAAACTTTCTTCTTTCCTGTGCAAAATCATGTACTACCTGTTACTAATAATGTTACATCACAAGGTTTTTGTTTCTCTGAACTTTCCAATATGGTTCATCAACCACAACAAAACAACACTGCTCATTGCACTGCTGGTTTTCTTCTTAGTGAGATCATGAACAACCATGGTTCTAATTCCTTAAAGAAAGAACAACTTCAGGACAAGAATGTTAAGATAATGCACCAAACTCCACCTTTTAACTTCTGTTTTGCACCCTCTACTACTACTGTTGCACCTCCCTCCATTTCCTCCACCATCACTGTTCCATCCCCTATCATTTCTCAAGTTCAAGGCATTGGAGAAACTGGTGTTCCTGCAAGATCAATGGTGTTCATCAATGATGTGGCATTTGAGGTAGCATCTGGACCTTTCAATGTTCGTCAAGCATTTGGTGATGATGCTGTTCTCATCAATTCCACTGGTCAACCTGTTTTAACAAACCAATGGGGTGTCACTCTCCATTCTCTCCAGCATGGTGCATGTTATTATCTTGTAAGCACGTAA 1203 0.399 MASSNRHWPSMFKSKPCNTHHQWQHDINSSLISSSACHRTPYSGEERSAEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNQNSKNQNQNQNQNLQNQEHPPQQNNSVSSLSQITTAPSSSSSSSEKSPPKELIPSKVFSLGFTNINDVVPNSPTASVNQNYFQPQNETNLLPTPQVTAPTETFFFPVQNHVLPVTNNVTSQGFCFSELSNMVHQPQQNNTAHCTAGFLLSEIMNNHGSNSLKKEQLQDKNVKIMHQTPPFNFCFAPSTTTVAPPSISSTITVPSPIISQVQGIGETGVPARSMVFINDVAFEVASGPFNVRQAFGDDAVLINSTGQPVLTNQWGVTLHSLQHGACYYLVST 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00608 400 MobiDBLite consensus disorder prediction 43 58 - -
Trre4g00608 400 MobiDBLite consensus disorder prediction 110 171 - -
Trre4g00608 400 MobiDBLite consensus disorder prediction 119 168 - -
Trre4g00608 400 Gene3D - 43 112 - -
Trre4g00608 400 FunFam WUSCHEL-related homeobox 11 52 131 - -
Trre4g00608 400 Pfam Homeodomain 52 112 IPR001356 GO:0003677
Trre4g00608 400 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 399 IPR044557 GO:0003700|GO:0050793
Trre4g00608 400 MobiDBLite consensus disorder prediction 36 58 - -
Trre4g00608 400 ProSiteProfiles 'Homeobox' domain profile. 48 113 IPR001356 GO:0003677
Trre4g00608 400 SMART HOX_1 50 117 IPR001356 GO:0003677
Trre4g00608 400 Coils Coil 114 134 - -
Trre4g00608 400 CDD homeodomain 51 113 IPR001356 GO:0003677
Trre4g00608 400 SUPERFAMILY Homeodomain-like 46 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00608 Trre-Chr4 4316751 4318962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00608 220 398 Wox Gene Family AT5G45980 34.737 1.98e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre4g00608 Homeodomain 5.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00608 - - aprc:113852083 496.123