LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g00605	ATGAAACAACAACATAAAGTGTTTCCTCTTCTGGTGCTGCTTCTTTTCCAAGTTGTGATTGTTTCATCACAGACAAATAATGGAGATTTAACTGCTCTTTCATCTCTAGTACAATCATGGAAAAACAAACCATTAAATTGGGTTGGTGATCCTTGTGGAAATGGTTGGGACGGAATTCGTTGCACCAATTCAAGAATTACCGAATTGAAACTAGCTGCCTTGGGTTTGGAGGGTCAACTATCTTCAGCAATCCAGTCCTTATCGGAACTCGTAACGCTGGATCTTTCATACAACACAGGCATTACAGGAACAATTCCACGAGAAATTGGAAATTTGAAAAACCTCGATTCCTTGGCATTGGTTAATTGCGGCTTCTCTGGGCCTATTCCGGATACAATAGGATCTTTGAAGAAGCTGACATTTTTGGCACTGAATTCGAACAAGTTGAATGGAAATATTCCGCACTCTCTTGGCAATCTAGCGAACCTTGATTGGTTAGATCTTGATGATAACCAACTTGAAGGGCCTATTCCTGTCTCTAATGATCAAGGACAATCGGGTTTGGACATGCTCCATTTGGCGAAGCACTTTCATTTAGGGAACAATAAACTCTCAGGTCCAATACCATCACAGCTTTTTAATTCCAGCATGATACTAAAACATGTGCTTTTCAACCACAATCAACTAAACGGCAGTATTCCTAGCACCCTTAGCAGCCTTGTGAGTACATTGGAAGTGGTGCGCTTTGACAACAATCAATTAAGCGGTACAGTACCTTCCAGCTTGAACAATCTCGATAAACTTAGCGAGCTCTATTTATCACACAATCAACTGAGCGGCTCTCTTCCGGATCTTACTGGAATGAATAGTCTCACCACCGTGGATCTGAGTGACAATAGCTTCAATTCATCTTCTATTCCTTCATGGGTTTATACTCCTAGTCTAACAAATCTGGTAACAGTAATACTGAAGGACAATCAGCTCGGTGGCACATTAAATATCAGCGGTGGCTACAGAAAAAATCTGCAACTCATTGATTTGCAAAATAATCGTATTACCGACTTCGTGTTTGGAAACCAAAAATGGAATTTTGACTTGAGACTGGCTCAAAATATTAGAGTTTGTCTTGAAAATGGAGTTTCTGATGAGAGTTACTGTAAAGCTCCCCAAGCCATTCCCAGATATTCAACATCGCCAAATGGTTGCTCGCCTCCTTCGTGCAGTAACGATCAGATTGCCAGCCCTAACTGTAAATGTGCATTTCCCTATAGTGGAGATCTATCATCCAGAGCTTTTAGTGTTTCAAACTATAGTGACACAAGTTACTACAAAGAAATCGAGCGAACTCTGCTAGATACATTCCGAAAACAAAATATTCCGGTGGATTCAGTTTCTCTGAGTAATCCTATCAAGGTTGCATCTACTGATAATTTTCAGTTGACTCTTAATGTATTCCCTTCTCAAACCGATCGTTTCAATACAACTGGAGTTTCAAGTGCTGCTTTTGTTCTTAGCAACCAAATTTACGAGCCTCCATCATATTTCACCCCTTACATCTTTATTGGCAGTAGCTATCAATATTATGGAGGAGAACCTAAAGGATCAAAGTCATCACATACTGGGGCTATAGTTGGTGCAGTAGCTGCTGTATTGGTCATTCTTGTACTGGCAGTCATCATAGGGTTATACGTCATGAGCAAGAAAAGAAGAGCAGGATCTTCCGAGGGGAACCCTTTTGTAAACTGGGAACAGAACAAGAATAGTGGAGCTGCTCCTCAGTTGAAAGGAGCGCGGTGGTTTTCATTTGATGACATGAGGAAATACACCAACAATTTCGCAGAAGCAAACACTATCGGATCAGGAGGCTATGGACAGGTTTACCAAGGTGCTCTTCCCACTGGGGAATTGGTTGCAATCAAAAGGGCTGGAAAAGAATCTATGCAGGGAGCTGTTGAGTTTAAAACTGAGATTGAACTTCTATCGAGGGTCCATCATAAGAATCTCGTTAGTCTTGTTGGCTTCTGTTACGAGAAAGGTGAACAAATGTTGGTCTATGAGTACGTTCCAAACGGCACTTTATTGGATAGTCTTTCAGGAAAATCTGGGATATGGATGGATTGGATAAGGAGGCTCAAAGTTACGTTGGGTGCCGCCAGGGGTCTGACCTATCTACATGAACTTGCTGACCCACCAATCATACACAGAGACATAAAATCAAGCAATATCCTACTTGATAATCATCTCGTTGCAAAAGTTGCTGATTTTGGTCTCTCGAAACTTCTTACTGATAGCGATAGGGGCCATGTTACTACTCAAGTCAAAGGAACAATGGGATACTTGGATCCGGAATATTACATGACCCAGCAATTGACAGAAAAGAGTGATGTGTATAGCTTTGGAGTGCTAATGTTGGAACTAGCAACATCAAGAAAGCCAATAGAGCAAGGAAAATATATTGTAAGAGAGGTAATGAGGGTAATGGATACATCAAAAGAGTTATACAACCTTCATTCCATTATAGATCAAAGTCTACTCAAAGCGGCGAGACCAATAGGTTTAGAAAGGTATGTGGAGCTAGCATTGAGGTGTGTCAAAGAATATGCAGCTGAGAGACCTTCAACGGCCGAGGTTGCGAAAGAGATCGAAAGCATAATCGAGCTTGTTGGAGTGAATCCGGATTCGGAATCAGCTCCAACAACAGAAACTTATGTGGATGCAGGTGCTGGGGATGGTAAACATCCTTATGCGAATGACGATGAGTTTGAATATAGTGGAATGTTTCCAACAACAAGGGTAGATCCTCAATGA	2808	0.4131	MKQQHKVFPLLVLLLFQVVIVSSQTNNGDLTALSSLVQSWKNKPLNWVGDPCGNGWDGIRCTNSRITELKLAALGLEGQLSSAIQSLSELVTLDLSYNTGITGTIPREIGNLKNLDSLALVNCGFSGPIPDTIGSLKKLTFLALNSNKLNGNIPHSLGNLANLDWLDLDDNQLEGPIPVSNDQGQSGLDMLHLAKHFHLGNNKLSGPIPSQLFNSSMILKHVLFNHNQLNGSIPSTLSSLVSTLEVVRFDNNQLSGTVPSSLNNLDKLSELYLSHNQLSGSLPDLTGMNSLTTVDLSDNSFNSSSIPSWVYTPSLTNLVTVILKDNQLGGTLNISGGYRKNLQLIDLQNNRITDFVFGNQKWNFDLRLAQNIRVCLENGVSDESYCKAPQAIPRYSTSPNGCSPPSCSNDQIASPNCKCAFPYSGDLSSRAFSVSNYSDTSYYKEIERTLLDTFRKQNIPVDSVSLSNPIKVASTDNFQLTLNVFPSQTDRFNTTGVSSAAFVLSNQIYEPPSYFTPYIFIGSSYQYYGGEPKGSKSSHTGAIVGAVAAVLVILVLAVIIGLYVMSKKRRAGSSEGNPFVNWEQNKNSGAAPQLKGARWFSFDDMRKYTNNFAEANTIGSGGYGQVYQGALPTGELVAIKRAGKESMQGAVEFKTEIELLSRVHHKNLVSLVGFCYEKGEQMLVYEYVPNGTLLDSLSGKSGIWMDWIRRLKVTLGAARGLTYLHELADPPIIHRDIKSSNILLDNHLVAKVADFGLSKLLTDSDRGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELATSRKPIEQGKYIVREVMRVMDTSKELYNLHSIIDQSLLKAARPIGLERYVELALRCVKEYAAERPSTAEVAKEIESIIELVGVNPDSESAPTTETYVDAGAGDGKHPYANDDEFEYSGMFPTTRVDPQ	935

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g00605	935	SUPERFAMILY	L domain-like	43	361	-	-
	Trre4g00605	935	Gene3D	Ribonuclease Inhibitor	24	186	IPR032675	-
	Trre4g00605	935	Gene3D	Transferase(Phosphotransferase) domain 1	688	896	-	-
	Trre4g00605	935	FunFam	Leucine-rich repeat protein kinase family protein	184	284	-	-
	Trre4g00605	935	Pfam	Protein kinase domain	614	879	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g00605	935	ProSiteProfiles	Leucine-rich repeat profile.	267	289	IPR001611	GO:0005515
	Trre4g00605	935	Gene3D	Ribonuclease Inhibitor	187	371	IPR032675	-
	Trre4g00605	935	Gene3D	Phosphorylase Kinase; domain 1	582	687	-	-
	Trre4g00605	935	FunFam	Leucine-rich repeat protein kinase family protein	580	687	-	-
	Trre4g00605	935	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	688	897	-	-
	Trre4g00605	935	MobiDBLite	consensus disorder prediction	892	935	-	-
	Trre4g00605	935	FunFam	Leucine-rich repeat family protein	28	182	-	-
	Trre4g00605	935	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	732	744	IPR008271	GO:0004672\|GO:0006468
	Trre4g00605	935	SUPERFAMILY	Protein kinase-like (PK-like)	598	893	IPR011009	-
	Trre4g00605	935	PANTHER	RECEPTOR-LIKE PROTEIN 55	38	884	-	-
	Trre4g00605	935	CDD	STKc_IRAK	618	884	-	-
	Trre4g00605	935	ProSitePatterns	Protein kinases ATP-binding region signature.	618	644	IPR017441	GO:0005524
	Trre4g00605	935	SMART	serkin_6	612	885	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g00605	935	ProSiteProfiles	Protein kinase domain profile.	612	885	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g00605	Trre-Chr4	4281922	4287523	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g00605	10	935	Receptor kinase-like Gene Family	AT5G49760	51.050	0.0	877

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Trre4g00605		Pkinase	1.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g00605	-		-	mtr:11440804	1523.06