Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00578 ATGAAGCTCAATGAAGAAATTCAAATCATAAAATGTCCTTCATGTAACCATAACATTGAAGTCAAAGATCAGGGTGGTTTAATTCATGATTTGCCTGGGTTACCAGCTGGAGTAAAATTTGATCCAAATGACATAGAAATATTACAACATTTGGAGGCAAAAGTGATGTCTGATGTGTGCAAGATTCATCCACTTATTGATCAATTCATACCAACACTTGAAGGAGAAAATGGAATTTGTTATACACACCCAGAAAAACTACCAGGAGTCAAGAAAGATGGACAAATCCGCCACTTTTTTCATAGACCTTCCAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAAGTGAAACAAGATGGCATAAAACAGGGAAAACAAGAGCAGTTTTTGTTAATGGTGTTGTTAAAGGTTTTAAAAAGATATTAGTACTCTACACAAATTATTGCAAACAAGGAAAACCAGAGAAAACTAATTGGGTTATGCATCAATATCATCTTGGTAGTAATGAAGAAGAAAGAGATGGAGAATTAGTTGCTTCAAAAGTGTTCTACCAAACACAACCTAGACAAAGTGGTAATTCCAATTCCATTAGTAATTTAAGAGATTCTTCATATGATAAAATAATTAACAAAGGAAGTGACCATGGTAATAATAGCAATACAACACCTAATAACAATTTAGGTATTGTGGAATGTTACAATGGTCCTTATACAAATTATGACCAAAGGGAAAGGTCCTCACAATTTAGTCCAAACTTGGTTGTCCAAGGTGATGGATCAATTATTAGGTTAACAATGGATGCAAACAAAGTAAGAGTACTAGAAAGAAAGTAA 858 0.338 MKLNEEIQIIKCPSCNHNIEVKDQGGLIHDLPGLPAGVKFDPNDIEILQHLEAKVMSDVCKIHPLIDQFIPTLEGENGICYTHPEKLPGVKKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFVNGVVKGFKKILVLYTNYCKQGKPEKTNWVMHQYHLGSNEEERDGELVASKVFYQTQPRQSGNSNSISNLRDSSYDKIINKGSDHGNNSNTTPNNNLGIVECYNGPYTNYDQRERSSQFSPNLVVQGDGSIIRLTMDANKVRVLERK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00578 285 Pfam No apical meristem (NAM) protein 35 174 IPR003441 GO:0003677|GO:0006355
Trre4g00578 285 SUPERFAMILY NAC domain 27 193 IPR036093 GO:0003677|GO:0006355
Trre4g00578 285 ProSiteProfiles NAC domain profile. 34 193 IPR003441 GO:0003677|GO:0006355
Trre4g00578 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 216 IPR044799 GO:0003700
Trre4g00578 285 FunFam NAC domain-containing protein 73 43 197 - -
Trre4g00578 285 Gene3D NAC domain 44 197 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00578 Trre-Chr4 4108675 4111795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00578 2 278 NAC Transcription Factor Family AT1G28470 60.976 1.50e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre4g00578 NAM 3.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00578 - - gmx:100809389 408.683