Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00577 ATGACTTGGTGCAACAATGACTCTAACCATGAAGAGGATGAATTAATCACTCCATCTGAAGATAATAACAACAACACTGATGTTAGTGATCATCACATGAAGCTCAATGAAGAAATTCAAATCATAAAATGTCCTTCATGTAACCATAACATTGAAGTCAAAGATCAGGGTGGTTTAATTCATGATTTGCCTGGGTTACCAGCTGGAGTAAAATTTGATCCAAATGACATAGAAATATTACAACATTTGGAGGCAAAAGTGATGTCTGATGTGTGCAAGATTCATCCACTTATTGATCAATTCATACCAACACTTGAAGGAGAAAATGGAATTTGTTATACACACCCAGAAAAACTACCAGGAGTCAAGAAAGATGGACAAATCCGCCACTTTTTTCATAGACCTTCCAAAGCATACACAACAGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGAAGAAGGAAGTGAAACAAGATGGCATAAAACAGGGAAAACAAGAGCAGTTTTTGTTAATGGTGTTGTTAAAGGTTTTAAAAAGATATTAGTACTCTACACAAATTATTGCAAACAAGGAAAACCAGAGAAAACTAATTGGGTTATGCATCAATATCATCTTGGTAGTAATGAAGAAGAAAGAGATGGAGAATTAGTTGCTTCAAAAGTGTTCTACCAAACACAACCTAGACAAAGTGGTAATTCCAATTCCATTAGTAATTTAAGAGATTCTTCATATGATAAAATAATTAACAAAGGAAGTGACCATGGTAATAATAGCAATACAACACCTAATAACAATTTAGGTATTGTGGAATGTTACAATGGTCCTTATACAAATTATGACCAAAGGGAAAGGTCCTCACAATTTAGTCCAAACTTGGTTGTCCAAGGTGATGGATCAATTATTAGGTTAACAATGGATGCAAACAAAGTAAGAGTACTAGAAAGAAAGTAA 954 0.3407 MTWCNNDSNHEEDELITPSEDNNNNTDVSDHHMKLNEEIQIIKCPSCNHNIEVKDQGGLIHDLPGLPAGVKFDPNDIEILQHLEAKVMSDVCKIHPLIDQFIPTLEGENGICYTHPEKLPGVKKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRAVFVNGVVKGFKKILVLYTNYCKQGKPEKTNWVMHQYHLGSNEEERDGELVASKVFYQTQPRQSGNSNSISNLRDSSYDKIINKGSDHGNNSNTTPNNNLGIVECYNGPYTNYDQRERSSQFSPNLVVQGDGSIIRLTMDANKVRVLERK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00577 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 23 248 IPR044799 GO:0003700
Trre4g00577 317 Pfam No apical meristem (NAM) protein 67 206 IPR003441 GO:0003677|GO:0006355
Trre4g00577 317 ProSiteProfiles NAC domain profile. 66 225 IPR003441 GO:0003677|GO:0006355
Trre4g00577 317 MobiDBLite consensus disorder prediction 1 29 - -
Trre4g00577 317 Gene3D NAC domain 76 229 IPR036093 GO:0003677|GO:0006355
Trre4g00577 317 FunFam NAC domain-containing protein 73 75 229 - -
Trre4g00577 317 SUPERFAMILY NAC domain 59 225 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00577 Trre-Chr4 4108579 4111795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00577 1 310 NAC Transcription Factor Family AT1G28470 55.623 2.34e-112 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre4g00577 NAM 5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00577 - - gmx:100809389 422.935