Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00562 ATGGATGCTGAAGAAGCTGAGAACAATACCCAGAAGGGTGATGATGGGGGTGAAAATAGCAATGAGAATAACAATAACAACAATAACAATGGAAGTAATAGCAAAATTATGAGTTCAAGTGAAGGTCAGAGCAAACCCAAGCGTCAGATGAAAACCCCTTTTCAGCTTGAAATGTTAGAGAAAGCTTATGCTTTGGAAACTTACCCTTCGGAGAGTACGAGGGTAGAGCTGTCGGAGAAGTTGGGGTTGTCGGATCGACAGTTACAGATGTGGTTCTGTCACCGGAGGTTGAAAGACAAGAAGGAGTTACCAATTAAGAAGCCAAAAAAGGTGCCACCTTTGCCGGATTCTCCTACTGATGAACCTAACCCCAAGTTGGTTATTGAGACCTTAAATGAATATGGATCCGGGTCGGGTTCTGGGTCTAGTCCGTTTGCTCGACCGGAGTTGAGGAATGTCGTGCCTCCTCGGACTTACTATGAGTCGCCGCAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAAGCACAGTTAGGAGAGCCTTTAAGAGAAGATGAACCTATTTTAGGAATTGAGTTTGATCCATTGCCACCTGATGCATTTGGGGCACCCTTAGCCGTTGCAGAACAGCAGAAGCGGCCTAGTCTTGCCTACGACAGTAAAATATACGAAAGACATGAAGTTAGAACGAATAAGGCCATGGCAAGGACGTTCCCTGAATATACATTTGTTCCGAACCAGTCCAGCATTAGATCTGATACATTTGGACAATTGAGCCAGCCTCATTTATATGATCCAATGGAGGTTCCTACTAGAACTCCTCCTTTTCCGATTGGAAATGAACATCTACCTAGAACTCATGCTACTCAAAGCCATTCTTCCCGTGCTCGCCTTTCATCTCAACAGGACAAGCACGTGACTCCCTATACTTCCCCTCCCCCGCTTTTGTCTCAACACGACAAAAAAGTGATTCCCTATCCATCTCCTCCTCGAGACAATGATGTTGTCCCCAAAAGGGAACCTCACATAAACATAGCCAATATTGGTATGAACTCCCAATTCACTGATCACCAAATTGTTGGACAAGAAAATTCTATAGCTTTACCTGGTGGACAAGTTATCCATAATGATGCAGTGCTGCGGGTGGAGAAGAAACGAAAGAGTGACGATGTCAGAGTTGCAAAGGAAGTTGAAGCCTATGAAATAAGGATGAAGAAAGAGCTTGAGAAACAAGATATCCTACGAAGAAAGAATGAAGAGCGAATGAGGAAAGAAATGGAAAGACAAGATCGTGAGAGAAGGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATTAAGGCGTGAGCAAAGGCGGGAGATGGAACGAAGGGAAAAATATTTGATAAAGGAACATTTAAGAGCTGAGAAAAGGAAGCAGAAAGAAGAGATTCGCAAAGAGAAAGAGGCAGAGAGAAGGAAAGCGGCCCTTGAAAAGGCAAATGCTCGTAGAATAGCTAAAGAATCTATGGAGCTCATTGAGGATGAACAGCTGGAATTGATGGAGTTGGCTGCAGCAAGCAAGGGGCTGCCCTCTATTATCCAAATTGATCTTGATACTCTGCAAAACCTCGAATCATTTAGGGATTCCTTGTGTGTTTTCCCGCCAAAAAGTGTGAAGCTAAAAAAACCATTTGCTATCCAGCCCTGGATCAACTCGGATCAAGATGTTGGCAACCTTCTCATGGTTTGGAGATTCTTAATTACCTTTGCTGATGTTCTGGAGTTGTGGCCTTTTACTCTTGATGAATTTGTTCAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTGTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAGTGAACCAGAATGGAGCAGCTAATCCTGCTGGTGGCCATCCAGAGATTGTGGAAGGAGCATATACATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCTGAAATTTTGCGACAGTTAGCGCTATCTGCAGGATTTGGACCAAAGCTGAGAAAAAGAAGTATTACGTGGTCATATGCAAATGATAAAGAAGAGGGAAGAAGTGGTGAAGATGTCATTTCTACACTTCGTAATGGTTCAGCAGCTGTAAGTGCAGTGGCAAAAATGCAAGAGAAAGGTCTATTAGCTCCTCGAAGATCAAGACATAGGTTAACTCCTGGAACCGTTAAATTTGCAGCATTTCATGTTCTCTCTCTTGAGGGCAGCAAGGGTTTGAATGTACTAGATCTTGCAGAAAAGATTCAGAAATCTGGTCTTCGGGACTTGACGACAAGCAAGACACCTGAAGCATCAATTTCGGTTGCTTTGACTAGAGATGGCAAACTTTTCGAAAGAATAGCTCCATCAACATATCGTGTACGAACTGCATTTAGAAAGGATCCTGTTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATCCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCCGATGATGTTGAAAGAGAAGAAGAGTCAGAAAGTGAAGTTGATGAGGATCCTGAAGACGATGATTTGGTAAATCCTTCAAGTGGAAACCAAAATACAGAACAGTATCATGATATGAACATTTCCTCAGTAAATGTAAACGAAAGTTCGGGCCATGAAGTAGACCTTATTCAAAATGAGCTTGATACTGATCTGCCTTGTTTTCTTGAGAATGGTTCCACATCTAAGGATGTTGATCTTCCCAGTTCTGTCACTGTACAACCCGTTGCTTTTGAAAATCTAAATACTGAAAATCTTGATGATGAAAGTATGGAAATTGATGAAACCAAGTCTGGAGAATCATGGGTTCAAGGGCTTACCGAAGGAGAATATTCCGATCTTAGTGTAGAAGAGCGTCTAAATGCACTTGTTGCATTGGTTGGGGTGGCAAATGAAGGAAATTCAGTTCGTATTGTTCTTGAGGATCGATTGGAAGCAGCAAATGCTCTGAAAAAGCAAATGTGGGCAGAAGCACAAATAGATAAAGTTCGTCTAAAAGATGATTATATTAGTAAATTAGATTTCCAACGACTTGCCGGAAATAAAATTGAAACACAAGAAGGAAACCAAAGCCCATTGCTCGACATCAATATTAACAACATTAAGAATGAAGCTTCACCGAGCACTGCAGAAAACCAAAAAGGAGCTTCTTCTGCACAGAGCCTACTTATTGAAAAGCCATCAACAGTTCAAGATTTCGGCTCAGGCACAGGACCAGATACCTTTCAGAGTCAGGTAGCTGCCCAATATTCAAAAAGATCGCGATCACAGTTGAAATCTTATATTTCCCACCTAGCAGAGGAGATGTATGTCTACAGATCTTTACCCCTTGGGCAAGACCGCAGGCGTAATCGATATTGGCAATTTGTTGCATCTGCTTCTAGTAACGATCCCGGTTCTGGCAGGATCTTTGTTGAACATCATGATGGCAGTTGGAGACTAATTGATTCTGAAGAGGACTTTGATATTCTTTTGACATCACTGGATTCACGTGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAAGATTGAGAAATCCTTTAAAGAAAATGTTCGAAAAAATACACAATATGCAAAAATCAGAAGCATAGGGGAAGGCTCTATTAAAATTGAAGCTAATGAAAAATGTCCAATGCCTGAGCGCCATTCAGGATTTGACAGTCCTAGCAGTACCCTTCATGACTTGAACTCTGGTACATCCGAAACTTCATCATCCTTCAAAATTGAGCTTTGGAAAAGTGAGAACGAAAAGAAAGCTGCATTGAGAAGGTATCAAGATTTTCAGAAGTGGATGTGGAAAGAATGCAATAATTCATCAATTTTATGTGCAATGAAATTTGGGGTAAAGAGATGCAAACCTCAGGTGGATATTTGTGAAATCTGTCTCAATCCTTATTTTGTCGAAGACTCCCATTGCAATTCCTGCCACCGCACGTTTCCGTCAAATAATGGATTTAGTTTTTCTAAACATGCATTTCAATGTGTTGGCAATTTATCCAAAGATATTTGTATCATGGAGCATTCTCTTCCCCTAAGGACTAGATTGCTCAAGGTCCTACTGTCATATATGGAGGCATCTGTTCTCTCTGAAGCATTTGGAACAATTTGGACAACTGATTTTAGGAAGCATTGGGGTGTGAAGTTGAGTAAATCATCATCTGTTGAGGAACTTTTACAGATGTTGACCCTATTTGAAAAAGCACTACGGCGAGATTTTCTGTCATCAGACTTCTCTACAACAGACGAATTGTTGGGATTAAGCAGCAAGTCAAAAAGTGCTGCACATGTGTCTGCTGATCCTGAATCAGTTGCTTTACTTCCATGGATTCCACAAACCACTGCAGCATTGTCTCTCAGGCTTTTTGAGTTCGATTCATCCATCAGCTATGTAAAGCTTGAGAGACTTGAGCCTGTTGAGGAAAAAGAAGCAAGAGAATACATTAGGCTTCCATCAAGATATACTCCCTTTAAGCCTAATAGTGTGGTTGAGCCAACAGCACTTGACCATGATGGATTCACCAAAGCTAAATCCTCTGCTAAAATTGTACGAAGCAATAAACGTGGACGAGGGGCTAGTGATCATGGGCGGGGTAAAAATCTGTCTAAAAGAATGTACAATTCCAAACGAGATGCTGGCCGTCGAAACATTAAGATCACCGAGAATCTAAGTCAAAAACTAAAACTGCAAGGACGAGGAACACAAGGACAAGGAGGTGGACGAGGTCGCCGAACGGTCAGAAAACGTAGAGTAGAAAAAAGAGCTGTTGAAGATTTGTTGCTGGGACGTGCACCGGCCAGTCATAGCTCCATGAGTGGGAGAGAACCATTTAGAAGCTTGCATGAAGAATGGGATGATGGAGAAAAGGCAAGTCCCATGACTCCTGTTCACATTGGGGTTGATGAAAATAGTAACAGTGCTGAAGAGGTGGAATCTGATGATAATGCTCAACCAATGGAATTTGATGATAATGTTCAAGCAGTGGAATCTGATGATGATGCTCAAGCAATGGAATCTGATGATGATGCTCAAGCAGTAGAATATGATCATGGAAACTGGGAAATAGGTTATAATGGTGTCTCTCCTAACGGATGGAATAGGGATTTGGTTGGTATGAGTGATGAAGAAGTGGATGCTTATGAAGATGGCAATGGCAATGACAATGACAATGGAAATGTTATTGGCTTTGAAGAGAATGAAGAGGAGGATTCCGAGGAAGATGTTATGAGTGAAGGTTCAGATGGCATGGCGAATAGAGTAGAGAATGTAGGAGGCTCATATTTGTCTGTCTCTGAAGATTCTTCTGATTAG 5418 0.4162 MDAEEAENNTQKGDDGGENSNENNNNNNNNGSNSKIMSSSEGQSKPKRQMKTPFQLEMLEKAYALETYPSESTRVELSEKLGLSDRQLQMWFCHRRLKDKKELPIKKPKKVPPLPDSPTDEPNPKLVIETLNEYGSGSGSGSSPFARPELRNVVPPRTYYESPQTIMELRAIACVEAQLGEPLREDEPILGIEFDPLPPDAFGAPLAVAEQQKRPSLAYDSKIYERHEVRTNKAMARTFPEYTFVPNQSSIRSDTFGQLSQPHLYDPMEVPTRTPPFPIGNEHLPRTHATQSHSSRARLSSQQDKHVTPYTSPPPLLSQHDKKVIPYPSPPRDNDVVPKREPHINIANIGMNSQFTDHQIVGQENSIALPGGQVIHNDAVLRVEKKRKSDDVRVAKEVEAYEIRMKKELEKQDILRRKNEERMRKEMERQDRERRKEEERLMRERQREEERLRREQRREMERREKYLIKEHLRAEKRKQKEEIRKEKEAERRKAALEKANARRIAKESMELIEDEQLELMELAAASKGLPSIIQIDLDTLQNLESFRDSLCVFPPKSVKLKKPFAIQPWINSDQDVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVAVLKVIIKDIEDVARTPSTGLGVNQNGAANPAGGHPEIVEGAYTWGFDIRNWQKNLNQLTWPEILRQLALSAGFGPKLRKRSITWSYANDKEEGRSGEDVISTLRNGSAAVSAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLNVLDLAEKIQKSGLRDLTTSKTPEASISVALTRDGKLFERIAPSTYRVRTAFRKDPVDAESILSEARKKIQIFENGFLAGEDADDVEREEESESEVDEDPEDDDLVNPSSGNQNTEQYHDMNISSVNVNESSGHEVDLIQNELDTDLPCFLENGSTSKDVDLPSSVTVQPVAFENLNTENLDDESMEIDETKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSVRIVLEDRLEAANALKKQMWAEAQIDKVRLKDDYISKLDFQRLAGNKIETQEGNQSPLLDININNIKNEASPSTAENQKGASSAQSLLIEKPSTVQDFGSGTGPDTFQSQVAAQYSKRSRSQLKSYISHLAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHHDGSWRLIDSEEDFDILLTSLDSRGIRESHLRLMLQKIEKSFKENVRKNTQYAKIRSIGEGSIKIEANEKCPMPERHSGFDSPSSTLHDLNSGTSETSSSFKIELWKSENEKKAALRRYQDFQKWMWKECNNSSILCAMKFGVKRCKPQVDICEICLNPYFVEDSHCNSCHRTFPSNNGFSFSKHAFQCVGNLSKDICIMEHSLPLRTRLLKVLLSYMEASVLSEAFGTIWTTDFRKHWGVKLSKSSSVEELLQMLTLFEKALRRDFLSSDFSTTDELLGLSSKSKSAAHVSADPESVALLPWIPQTTAALSLRLFEFDSSISYVKLERLEPVEEKEAREYIRLPSRYTPFKPNSVVEPTALDHDGFTKAKSSAKIVRSNKRGRGASDHGRGKNLSKRMYNSKRDAGRRNIKITENLSQKLKLQGRGTQGQGGGRGRRTVRKRRVEKRAVEDLLLGRAPASHSSMSGREPFRSLHEEWDDGEKASPMTPVHIGVDENSNSAEEVESDDNAQPMEFDDNVQAVESDDDAQAMESDDDAQAVEYDHGNWEIGYNGVSPNGWNRDLVGMSDEEVDAYEDGNGNDNDNGNVIGFEENEEEDSEEDVMSEGSDGMANRVENVGGSYLSVSEDSSD 1805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00562 1805 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Trre4g00562 1805 Pfam Homeodomain 45 101 IPR001356 GO:0003677
Trre4g00562 1805 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 966 1009 IPR028942 -
Trre4g00562 1805 ProSiteProfiles HARE-type HTH domain profile. 755 824 IPR007759 GO:0006355
Trre4g00562 1805 MobiDBLite consensus disorder prediction 422 456 - -
Trre4g00562 1805 SUPERFAMILY Homeodomain-like 32 101 IPR009057 -
Trre4g00562 1805 Coils Coil 469 504 - -
Trre4g00562 1805 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1141 1213 IPR028941 -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 1254 1270 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 856 878 - -
Trre4g00562 1805 SMART testlast3 573 632 IPR018501 -
Trre4g00562 1805 Pfam HB1, ASXL, restriction endonuclease HTH domain 755 823 IPR007759 GO:0006355
Trre4g00562 1805 MobiDBLite consensus disorder prediction 285 315 - -
Trre4g00562 1805 Pfam DDT domain 574 629 IPR018501 -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 1249 1270 - -
Trre4g00562 1805 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 26 1805 IPR044977 GO:0006357
Trre4g00562 1805 SMART HOX_1 44 106 IPR001356 GO:0003677
Trre4g00562 1805 Coils Coil 398 462 - -
Trre4g00562 1805 CDD homeodomain 47 102 IPR001356 GO:0003677
Trre4g00562 1805 MobiDBLite consensus disorder prediction 1597 1620 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 1728 1805 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 275 322 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 1551 1585 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 1556 1585 - -
Trre4g00562 1805 ProSiteProfiles DDT domain profile. 573 632 IPR018501 -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 853 892 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 13 50 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 103 122 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 1763 1779 - -
Trre4g00562 1805 MobiDBLite consensus disorder prediction 1 55 - -
Trre4g00562 1805 Gene3D - 44 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00562 Trre-Chr4 3936782 3945177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00562 38 1727 Homeobox Transcription Factor Family AT1G28420 48.629 0.0 1324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre4g00562 WSD 5.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00562 - - psat:127081735 2767.26