Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00561 ATGGGTTTGGATTACTATGAGATTTTGGAGGTTGAAAGGAATGCAACAGAAGAAGAGTTGAAAAAAGCTTACAGAAAACTTGCTATGAAATGGCATCCTGATAAAAATCCAGACAATAACAAAGATGCTGAGATTAAATTCAAACTCATATCTGAAGCATACGAGGTTTTAAGTGATCCACAAAAGAAAGCGATTTATGATCAATATGGAGAAAGCGGTCTTAAAAACGGAATGGCACCAACAGATGAAGGTGCAGCTTCATACTTCCAAACTCCGGATGGCAGAAGGTTTAGATTCAATCCAAGTGCAAATGGCGTCTTTGCAGAAGCTTTTGGTTTTTCAAGCCCATGTGGAGGAATGGGAATGAGGGGTGGCGGCTGCAGAGGCATGAGGGGTCGTTCGTGGGTTTCAAGTGCCTTCGGTGATATTTTTGGCCAAGACATGTTCGCAGGAAGCAGACAAGCTAGCCAAGTTCCAAGGCGCAAGGCACCTCCTATTGAAAACAAATTACCTTGCAGCCTTGAGGAGCTTTATAAAGGTACTACCAAAAAGATGAAGATCTCAAGGGAAATTGCATATGCAAGCGGAAAAACTCTACCTGCGGAGGAAATACTAACAATTGAAATCCAACCAGGCTGGAAAAAGGGAACAAAAATCACATTCCCAGAGAAAGGAAATGAGCAACCAAATGTTACTGCTGCAGATATTGTATTCATTATTGATGAGAAACCACACAGTGTATTTACTAGAGAAGGTAATGATTTGGTTGTGACACACAAGATATCACTTGCAGAAAGTGAATCTCTAATCAGAAGCTACACCTTCCAACTTACTACTTTGGATGGAAGGGACCTGACCATTGCCATAAACAATTTAATCGATCCAACCTATGAAGAAGTGGTTGCCGGAGAAGGGATGCCAATTTCCAAAAATCCTTCACAGAAGGGTAATCTTAGGATCAAATTCAACATCACATCCCCAAGCATGGTTCAAGCTGAAACAGAAAGCCAATATTAA 1017 0.41 MGLDYYEILEVERNATEEELKKAYRKLAMKWHPDKNPDNNKDAEIKFKLISEAYEVLSDPQKKAIYDQYGESGLKNGMAPTDEGAASYFQTPDGRRFRFNPSANGVFAEAFGFSSPCGGMGMRGGGCRGMRGRSWVSSAFGDIFGQDMFAGSRQASQVPRRKAPPIENKLPCSLEELYKGTTKKMKISREIAYASGKTLPAEEILTIEIQPGWKKGTKITFPEKGNEQPNVTAADIVFIIDEKPHSVFTREGNDLVVTHKISLAESESLIRSYTFQLTTLDGRDLTIAINNLIDPTYEEVVAGEGMPISKNPSQKGNLRIKFNITSPSMVQAETESQY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00561 338 CDD DnaJ_C 164 328 - -
Trre4g00561 338 Gene3D - 165 243 - -
Trre4g00561 338 Pfam DnaJ domain 4 67 IPR001623 -
Trre4g00561 338 FunFam DnaJ subfamily B member 13 245 328 - -
Trre4g00561 338 SUPERFAMILY Chaperone J-domain 4 73 IPR036869 -
Trre4g00561 338 CDD DnaJ 4 59 IPR001623 -
Trre4g00561 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Trre4g00561 338 Gene3D DnaJ domain 3 156 IPR036869 -
Trre4g00561 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 247 334 IPR008971 GO:0006457|GO:0051082
Trre4g00561 338 FunFam Dnaj homolog subfamily b member 162 243 - -
Trre4g00561 338 SMART dnaj_3 3 62 IPR001623 -
Trre4g00561 338 FunFam DnaJ subfamily B member 13 3 121 - -
Trre4g00561 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Trre4g00561 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 336 - -
Trre4g00561 338 Gene3D - 245 327 - -
Trre4g00561 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Trre4g00561 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Trre4g00561 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Trre4g00561 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Trre4g00561 338 Pfam DnaJ C terminal domain 166 327 IPR002939 -
Trre4g00561 338 Coils Coil 6 26 - -
Trre4g00561 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 160 256 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00561 Trre-Chr4 3930550 3935635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00561 5 69 C2H2 Transcription Factor Family AT1G74250 36.232 2.35e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00561 K09510 - gmx:100794650 456.447