Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00560 ATGGGAGTGGATTACTACAAGATTTTGAAGGTTGACAAGAATGCAACAGATGAAGAATTGAAGAAAGCATATAGAAAACTTGCCATGAAGTGGCACCCTGATAAAAATCCAACCAATAAGAAAGAAGCTGAATCCAAATTCAAAGAGATTTCTGAAGCATACGAGGTTTTAAGTGATCCACAAAAGAAAGCAATTTATGATCAATATGGAGAAGAAGGGCTTAAAGGGCAAGTACCACCACCACAAGATGCAGCTGGTGGGGCATCATTCTTCCAAAGTGGAGATGGGCCAACAACATTTAGGTTCAATCCAAGAAATGCAGATGATATATTTGCAGAGTTTTTTGGGTTTTCAAGCCCATTTGGAGGAATGGGTAATGGTGGGAATGGAATGAGAGGTGGGTCTAGATCTTTTGGTGGAATGTTTGGTGGTGGTGATGATATATTTTCTCAATTTGATGAAGGGAGGCCTATGCAGCGTCAGGGTCCTCGTAAGGCAGCTGCTATAGAAAATAGATTGCCTTGTAGCCTTGAAGAGCTCTATAAAGGGACAACCAAAAAGATGAAGATTTCAAGGGAAATTGCAGATGCAAGTGGGAAAACTATGCCGGTGGAAGAAATCTTAACAATTGAAGTAAAACCCGGATGGAAAAAAGGAACAAAAATCACATTCCCTGAGAAAGGAAATGAGCAACCAAATGTGATAGCAGCAGATCTTGTATTTGTCATTGATGAAAAACCACACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTGACACAGAAAATATCTCTTGCAGAAGCATTAACAGGTTACAATGTTCGTCTCACAACACTAGATGGAAGAGTTCTCAACATTCCTATAAACAATGTGATTCATCCAAACTATGAAGAGATTGTTTCAAAGGAAGGTATGCCTATTCCAAAAGATCCTAAACAGAAGGGTAATCTTAGGATCAAATTTAATATTAAGTTTCCAACAAGATTAACATCTGAGCAGAAAGCTGGAATCAAGAAACTTCTGACACAGTAG 1035 0.3855 MGVDYYKILKVDKNATDEELKKAYRKLAMKWHPDKNPTNKKEAESKFKEISEAYEVLSDPQKKAIYDQYGEEGLKGQVPPPQDAAGGASFFQSGDGPTTFRFNPRNADDIFAEFFGFSSPFGGMGNGGNGMRGGSRSFGGMFGGGDDIFSQFDEGRPMQRQGPRKAAAIENRLPCSLEELYKGTTKKMKISREIADASGKTMPVEEILTIEVKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKPHSVFTRDGNDLVVTQKISLAEALTGYNVRLTTLDGRVLNIPINNVIHPNYEEIVSKEGMPIPKDPKQKGNLRIKFNIKFPTRLTSEQKAGIKKLLTQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00560 344 Pfam DnaJ domain 4 67 IPR001623 -
Trre4g00560 344 FunFam DnaJ subfamily B member 13 3 125 - -
Trre4g00560 344 CDD DnaJ 4 59 IPR001623 -
Trre4g00560 344 SUPERFAMILY Chaperone J-domain 3 128 IPR036869 -
Trre4g00560 344 Gene3D - 248 328 - -
Trre4g00560 344 FunFam Dnaj homolog subfamily b member 165 246 - -
Trre4g00560 344 PRINTS DnaJ domain signature 62 81 IPR001623 -
Trre4g00560 344 PRINTS DnaJ domain signature 6 24 IPR001623 -
Trre4g00560 344 PRINTS DnaJ domain signature 42 62 IPR001623 -
Trre4g00560 344 PRINTS DnaJ domain signature 24 39 IPR001623 -
Trre4g00560 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 336 IPR008971 GO:0006457|GO:0051082
Trre4g00560 344 CDD DnaJ_C 169 330 - -
Trre4g00560 344 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 342 - -
Trre4g00560 344 Gene3D - 167 246 - -
Trre4g00560 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 254 IPR008971 GO:0006457|GO:0051082
Trre4g00560 344 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Trre4g00560 344 Pfam DnaJ C terminal domain 169 327 IPR002939 -
Trre4g00560 344 SMART dnaj_3 3 62 IPR001623 -
Trre4g00560 344 FunFam DnaJ subfamily B member 13 248 328 - -
Trre4g00560 344 Gene3D DnaJ domain 3 125 IPR036869 -
Trre4g00560 344 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00560 Trre-Chr4 3925867 3927869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00560 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.36e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00560 K09510 - cave:132172416 539.65