Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00556 ATGGAAGGCAGAAAAGTGAATATAATTGCTGCTACATCAGTGATTACACTGATAATTATCATAATCATTGCCCGTGTCTTGTTGAAACTCTCAAATGTTTTCTTCCTCATGTGTGGTGCTGGTGTTTCAGTGATCCTTGCAGTCATTGCTTTTGCATTTCTTAGCTTACGCCACAAACGCAGAACGAGAATATTGGAATCAGAGTTAAAATCAGAAAGTCGAGAGCTTCGAATAGATTACAGTTTCCTAAGAAAAGTTGCAGGGGTTCCAACAAAATTCAGATACAAGGAGCTTGAAGAAGCAACAGATGGGTTTCAATCACTTATTGGAAGAGGTTCTTCAGCTTCTGTTTTCAAAGGAATTCTAAATGATGGAACTTCGGTCGCTGTGAAAAGAATTGATGCAGAAGAAAGAGGAGAAAGAGAGTTCAAATCAGAAGTTGCAGCTATAGCTAATGTTCAACATGTGAATCTTGTGAGACTTTTTGGGTATTGTAATTCTTCTAAAGCTCCTAGGTATCTTGTTTATGATTTTATCTCAAATGGGTCATTGGATTGTTGGATTTTTCCCAAAAGGGAATCTCAAAGGCGTCCGCGTCACAGCGGATGCTTATCGTGGAATTTGAGGTATAAAGTTTCAATTGATGTTGCTAAAGGACTAGCATATCTTCACCACGATTGTAGATCAAGAATCTTACACCTTGATATAAAGCCGGAAAATATACTCTTGGATGAGTGCTTTAGAGCACTTGTTTCCGACTTCGGTCTCTCAAAACTTACTGGTAAAGACGAAAGCCAGTCGGTGTCTGCAATAAGAGGAACAAGAGGGTACATGGCACCTGAATGGCTTTTAGAAAAGGGTATTTCAGATAAAACCGATGTATATAGTTATGGAATGGTTTTATTGGAGATTGTTGGAGGACGAAAAAATGTATGTTTAATTGAAGATGAAAAGGACAAGTCAAAAAGGAAATGGCAATATTTTCCAAAGATTGTAAATGAGAAAGTGAAACAAGGGAAAATGATGGAAATTGTTGATCATAGGTTAATGGAATGTGGGGGTGTTGATGAGGTGGAGGTGTATAGATTGGTTTATACTGCTTTATGGTGTGTACAAGAGAAGCCAAGGTTAAGGCCTAGTATGGCTAGAGTGGTTGATATGCTTGAAGGGCGTGTGAAAGTGGAGGAGCCACCTACTAGTAGTAAAATGATTCTTGTTGATTTTCTTTCTGTTGATGATGATAATGTTGTTACAGATAGTAATAACATTAACATGCCAAGGTTGGACACTATGTCTAGTCAAGGAACACAAAGCAATGTGGAATGTAATTCTATCTACTCTTTTACTACTACTGTTTTTTCTGGAAGATAG 1371 0.3778 MEGRKVNIIAATSVITLIIIIIIARVLLKLSNVFFLMCGAGVSVILAVIAFAFLSLRHKRRTRILESELKSESRELRIDYSFLRKVAGVPTKFRYKELEEATDGFQSLIGRGSSASVFKGILNDGTSVAVKRIDAEERGEREFKSEVAAIANVQHVNLVRLFGYCNSSKAPRYLVYDFISNGSLDCWIFPKRESQRRPRHSGCLSWNLRYKVSIDVAKGLAYLHHDCRSRILHLDIKPENILLDECFRALVSDFGLSKLTGKDESQSVSAIRGTRGYMAPEWLLEKGISDKTDVYSYGMVLLEIVGGRKNVCLIEDEKDKSKRKWQYFPKIVNEKVKQGKMMEIVDHRLMECGGVDEVEVYRLVYTALWCVQEKPRLRPSMARVVDMLEGRVKVEEPPTSSKMILVDFLSVDDDNVVTDSNNINMPRLDTMSSQGTQSNVECNSIYSFTTTVFSGR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00556 456 ProSiteProfiles Protein kinase domain profile. 103 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00556 456 FunFam Putative receptor-like protein kinase 179 396 - -
Trre4g00556 456 FunFam Putative receptor-like protein kinase 70 178 - -
Trre4g00556 456 SMART serkin_6 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00556 456 Pfam Protein kinase domain 107 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00556 456 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Trre4g00556 456 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Trre4g00556 456 Gene3D Transferase(Phosphotransferase) domain 1 179 405 - -
Trre4g00556 456 SUPERFAMILY Protein kinase-like (PK-like) 85 389 IPR011009 -
Trre4g00556 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Trre4g00556 456 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 39 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00556 Trre-Chr4 3906156 3907526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00556 1 400 Receptor kinase-like Gene Family AT5G20050 62.935 4.53e-173 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre4g00556 Pkinase 7.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00556 - - gmx:100791152 649.047