Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00555 ATGGAAGGCAGAAAAGTGAATATAATTGCTGCTACATCAGTGATTACACTGATAATTATCATAATCATTGCCCGTGTCTTGTTGAAACTCTCAAATGTTTTCTTCCTCATGTGTGGTGCTGGTGTTTCAGTGATCCTTGCAGTCATTGCTTTTGCATTTCTTAGCTTACGCCACAAACGCAGAACGAGAATATTGGAATCAGAGTTAAAATCAGAAAGTCGAGAGCTTCGAATAGATTACAGTTTCCTAAGAAAAGTTGCAGGGGTTCCAACAAAATTCAGATACAAGGAGCTTGAAGAAGCAACAGATGGGTTTCAATCACTTATTGGAAGAGGTTCTTCAGCTTCTGTTTTCAAAGGAATTCTAAATGATGGAACTTCGGTCGCTGTGAAAAGAATTGATGCAGAAGAAAGAGGAGAAAGAGAGTTCAAATCAGAAGTTGCAGCTATAGCTAATGTTCAACATGTGAATCTTGTGAGACTTTTTGGGTTAATGGAATGTGGGGGTGTTGATGAGGTGGAGGTGTATAGATTGGTTTATACTGCTTTATGGTGTGTACAAGAGAAGCCAAGGTTAAGGCCTAGTATGGCTAGAGTGGTTGATATGCTTGAAGGGCGTGTGAAAGTGGAGGAGCCACCTACTAGTAGTAAAATGATTCTTGTTGATTTTCTTTCTGTTGATGATGATAATGTTGTTACAGATAGTAATAACATTAACATGCCAAGGTTGGACACTATGTCTAGTCAAGGAACACAAAGCAATGTGGAATGTAATTCTATCTACTCTTTTACTACTACTGTTTTTTCTGGAAGATAG 816 0.3836 MEGRKVNIIAATSVITLIIIIIIARVLLKLSNVFFLMCGAGVSVILAVIAFAFLSLRHKRRTRILESELKSESRELRIDYSFLRKVAGVPTKFRYKELEEATDGFQSLIGRGSSASVFKGILNDGTSVAVKRIDAEERGEREFKSEVAAIANVQHVNLVRLFGLMECGGVDEVEVYRLVYTALWCVQEKPRLRPSMARVVDMLEGRVKVEEPPTSSKMILVDFLSVDDDNVVTDSNNINMPRLDTMSSQGTQSNVECNSIYSFTTTVFSGR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00555 271 PANTHER OS07G0415500 PROTEIN 38 163 - -
Trre4g00555 271 SUPERFAMILY Protein kinase-like (PK-like) 85 169 IPR011009 -
Trre4g00555 271 Gene3D Phosphorylase Kinase; domain 1 65 180 - -
Trre4g00555 271 ProSiteProfiles Protein kinase domain profile. 103 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00555 271 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Trre4g00555 271 Pfam Protein kinase domain 107 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00555 271 FunFam Putative receptor-like protein kinase 70 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00555 Trre-Chr4 3906156 3907526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00555 177 215 Receptor kinase-like Gene Family AT5G20050 61.538 3.80e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre4g00555 Pkinase 4.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00555 - - gmx:100791152 217.624