Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00546 ATGATTTATGGTAGGTGTGCAGCTTGTAAGAGTCAAAGAAGAAGGTGTCCTTCTGATTGCATTTTCTCTCCTTATTTCCCTGCCAATGATCCTCAAAGATTTGCTTATGTTCACAAAATCTATGGTGGTAGCAATGTTGGAAAAATGCTTCAGCAATTGCCTGAGTATGTACGAGAACAAGCTGTAAATACTTTGTATTTAGAAGCACAATGTAGGATTCAAGATCCTGTTTATGGATGTGTTGGGATTATCTCTAAATTGTATCAACAAATCCATGATGCAGAAGTTGAGCTGGCCAAAATCCAAACTCAAATTGCTTGTCATAAGCTCCGAAATCAACTATTTGAAGTTGAATCAAATTTCAATGTCTTGTCCACAGTTGATGATGAATCAAATTTGAACTTTTTGCCACCACAAAGTAATAGCATGGAGCAGTTTCAGTGGCCTGATCATGTTCCTAATTTGTTCAATTAA 474 0.365 MIYGRCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHKIYGGSNVGKMLQQLPEYVREQAVNTLYLEAQCRIQDPVYGCVGIISKLYQQIHDAEVELAKIQTQIACHKLRNQLFEVESNFNVLSTVDDESNLNFLPPQSNSMEQFQWPDHVPNLFN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00546 157 Coils Coil 84 104 - -
Trre4g00546 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 123 - -
Trre4g00546 157 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Trre4g00546 157 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00546 Trre-Chr4 3871859 3872810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00546 5 106 AS2 family AT3G26660 65.686 1.00e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre4g00546 LOB 2.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00546 - - lang:109328513 233.032