Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00543 ATGGCTTCTTCATCTGCTTCGGGAAACCGTGAAGGACACTACAGAGGTGTTAGGAAGCGACCATGGGGACGTTATGCTGCTGAGATTCGTGATCCATGGAAGAAGACACGTGTTTGGTTAGGTACATTTGATACACCTGAAGAAGCTGCTCTTGCTTACGACGGCGCTGCTCGTTCTCTCCGTGGAACTAAAGCAAAAACTAACTTCCCACCGGCGCCGGGCTCCGGTGGTCTTTGTGTTGATCTCAACGCTCCTTCTGATCTTAGGTGGCCATCTGTTGCTTCTCGTGGGATTAAGCTTACTGAGTTTCTTCAAACTGGTGTTCTTAAGGATTTCAACGCTCCTCCTCAGCCTCCTCAACAACCTCCTCTTGTTACGGTGGCTGGACAAAGACAAAGTGAAGGTACTTTTGGTGTCTCCGGTAGAGTTATGGTGGCTGAGAACTCTCCAACTGCAGCTTATTTGGGACTTGTTAGACGTGGGATTCCGATTGACTTGAATGAACCTCCACCTTTGTGGCTATGA 525 0.4895 MASSSASGNREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGTKAKTNFPPAPGSGGLCVDLNAPSDLRWPSVASRGIKLTEFLQTGVLKDFNAPPQPPQQPPLVTVAGQRQSEGTFGVSGRVMVAENSPTAAYLGLVRRGIPIDLNEPPPLWL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00543 174 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Trre4g00543 174 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Trre4g00543 174 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Trre4g00543 174 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Trre4g00543 174 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Trre4g00543 174 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Trre4g00543 174 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Trre4g00543 174 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Trre4g00543 174 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 110 - -
Trre4g00543 174 FunFam Ethylene-responsive transcription factor 2 13 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00543 Trre-Chr4 3830805 3831329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00543 1 174 AP2-EREBP Transcription Factor Family AT1G28360 49.000 9.15e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g00543 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00543 - - cam:101504196 279.256