Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00542 ATGAGAGGAAAGTGTTTTGAGAAGTGTATTACTAAAGAAGAGGGCTCCTTGAACTTCATTGATGTTGTGCAATATCCAATTGAAGAAGCATTGCAAAGTCACCTATATGAGTTCAAGAATGAAATATGCACTTTATCAAAAATTGAGCATCTAAATCTTGTGAGGTTATATGAATATTTGGAGCATGGAAATCATAAGCTTATTGTTGTTGAGTATGTAGCTAATGGGAATCTTAGAGAACATTTAGATGTGTTTTGTGATTTTTCTGAATCAGTTGGTGGTTGTAGTCAAGCCACTTCTACACGGTTGCACGGTCCCAACATAGCAAAGGAACAAAGAGATGGACGGTCTTACAATAGAGGAGACATGTATGAAATCTCTCACACGAAGAGGAACGGATCATATGTTAATGATGAGGCTCGACAAAAAAATGAAGAGTTACAAAAAGAAAGGCAGACATCATCTGATAATGAGGCTTTTGTGACCGTGTTTGGGAAAGAGCATCATGGTTATGTTCGAGGAATGGGACTTGGTCCAACACCATCTCAAATTAATGGTTCTAGTTGTCGTCCTTCAGGATCAACTTCTTCATCGACTGCTGATGCCAAAATAGCTAAGATGCAAAGCGAAATTGATGTGCTAACTAAAGAAGTTGCTGAATTTGATGCAATGAAGGAACAATTTGCTCTTATTATGGCTAATATGCAAAACCATGGGTCTAACATAGGATCACCGTTTGAAGTACGACGCTCTTCTGAGTCTAGTCATAATGTTGAGGGTGATCAAGCAACTCCGGACGATTAA 804 0.3843 MRGKCFEKCITKEEGSLNFIDVVQYPIEEALQSHLYEFKNEICTLSKIEHLNLVRLYEYLEHGNHKLIVVEYVANGNLREHLDVFCDFSESVGGCSQATSTRLHGPNIAKEQRDGRSYNRGDMYEISHTKRNGSYVNDEARQKNEELQKERQTSSDNEAFVTVFGKEHHGYVRGMGLGPTPSQINGSSCRPSGSTSSSTADAKIAKMQSEIDVLTKEVAEFDAMKEQFALIMANMQNHGSNIGSPFEVRRSSESSHNVEGDQATPDD 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00542 267 MobiDBLite consensus disorder prediction 252 267 - -
Trre4g00542 267 Coils Coil 137 157 - -
Trre4g00542 267 Gene3D Transferase(Phosphotransferase) domain 1 12 103 - -
Trre4g00542 267 Coils Coil 204 224 - -
Trre4g00542 267 MobiDBLite consensus disorder prediction 179 202 - -
Trre4g00542 267 SUPERFAMILY Protein kinase-like (PK-like) 34 89 IPR011009 -
Trre4g00542 267 MobiDBLite consensus disorder prediction 242 267 - -
Trre4g00542 267 MobiDBLite consensus disorder prediction 180 202 - -
Trre4g00542 267 Pfam Plant transposase (Ptta/En/Spm family) 110 181 IPR004252 -
Trre4g00542 267 Pfam Protein tyrosine and serine/threonine kinase 27 83 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00542 Trre-Chr4 3814313 3822371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00542 37 82 Receptor kinase-like Gene Family AT4G20450 43.478 7.27e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Trre4g00542 Transposase_24 4.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00542 - - tpra:123887282 276.944