Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00540 ATGGAAGAGGAGGAAAAGCAAGAAACAGCCGTTGAGGAGAAAGATAAAGACAAAGATGAGGTTCCAGATCCTCTTCCCGATGCAGATAAACATAGCAAAGATTCAAGCCAGCATATGGAGCTTGATGGGAAAGAGGAGAATTTGGGGCAAGATTCTTGTGTGTCCGAGAACCCTGAAGTAATACAGCCAGCACATGATATGGAAGAGAATGATGCCATGCTTAAAGCATCTGTTACGTCACATGAAGAATTGACATTGAAAAAGGAGGAGTTCCCCGTGAAACAAGAAGTTTTGAGTCCTCCAAAACCAAGTGAAAACTTGATTCCTGCTGAAGATGGGAAAAATCAAGGCTTAAACATTGATGTTGAAAATTCTGGATATCTTCAGAGGAAAACCTTTGGAGGATGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGGACATTGATTCTAGGGCCACCAAGTTATCTAGTGATACGGGAAAAGATGTGGTTACCGGAATCATACCGAGAGATAATTTTGTTGAGAATGCTGATCGCGGTCAGAACTCTCAGGAGAAAATTACGCAGTCAGAGATGGAGTCACAGGTTGATGTGAAACAAAAGCCGTCAAGGACTAGAAGTCTGTCTCCCAGTGCTGAGATTAAAGATGGAAACAAAAGACCTGCAATTGCATGTGCTTTTTTCGCTAAAGGTTGGTGCATCAGAGGCAGTTCTTGTAGCTTTCTTCATATAAAAGATAGTGTTAATAATACCGACCAGGGGGCTGATGGAGACCTAGTTACTGCACATCAGAAGAGAGAATTGAAATTGGAAAAAGGTGTTAAGGAAAATGTTGACTGGTCAAGAACGAATGAGGGAGAAGCAAGTCCAAGTTGGCATTCATTTCGTGAAAAAGAGAAGTATAGATCTGCATTTAATACATCAAACAATTATTTCGGCTCAAATCTTTCCTCGTTTTCATCCCGTGAAGAGGGAATGTCTGCTATTCGAAACCACCATATGTACAGAGGATATACATCCAGAGAAGATTTTGGTTCATCTTTAGGTGCAACTGCTTTGGACTCTCAAAAGCTTTTGCACAGTGAGAAGGAATATCACGCCCATAAGTCCACTTACTCTTCAGATCGGGAAGATATGCATCTAGTTGGTTCATCTAGGGTTCCACCGCATGCTAATGGATATAAACTAAAAACCCGCTCTTATGATTGGGAACCTTCTGTTCCATTTCGACCATCATTTTTTATCACTTCTATGAATGTATCATCCCCCGGAGATCTTTATGACCCTCTTCGTGATAGCATCGAGATACCTAATATTGGAGATGGGTCTTTGAAAGCTTTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAAGTGCGGACATATGATGATTCTGCTGCAGTTGGGAAACACATGTCTGATCTTAATGATGAAAAAAGTTCAGTATCTTCACATAATAAGCTTTATGAAAATGAGCCAAACAGAAGTTCTGTTCCCCGCGGAAATGATTGTCTTGGAACCAAAACAGAAATAACATCAGGAACTTGTGAAAACTACCATAACGGTAACATAGGTGTGGGACAACATGCCTTTGGTGTTGAAGATAGGATGGAAACATCGAAAAAACGGACTGAGCATGATGCCATGCATCATGGTGATGGATCAGAGCACATAAAGAAGAGAGTAGCAAAGGATGATAAAATTCATGAAATGGAGGTTGACTTTCAGCCGGATAGCAGTGTGCACAAAGAAACAAAGGCGCTGAAATTTTTTCGTGCAACCCTTGTTGATCTAGTTAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATGTACTGATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACTTTAGAGCCACACCAAATTCCAACCACTGAAGATAATGCTAAGCATTATATTTCTTCATGTCGGCCGAAAATTGCAAAGTTAGTCCAGGGATATGTCAATAAATATAGCAAGCCTTGA 2028 0.4063 MEEEEKQETAVEEKDKDKDEVPDPLPDADKHSKDSSQHMELDGKEENLGQDSCVSENPEVIQPAHDMEENDAMLKASVTSHEELTLKKEEFPVKQEVLSPPKPSENLIPAEDGKNQGLNIDVENSGYLQRKTFGGCSEPDCNSKASLSDVKDIDSRATKLSSDTGKDVVTGIIPRDNFVENADRGQNSQEKITQSEMESQVDVKQKPSRTRSLSPSAEIKDGNKRPAIACAFFAKGWCIRGSSCSFLHIKDSVNNTDQGADGDLVTAHQKRELKLEKGVKENVDWSRTNEGEASPSWHSFREKEKYRSAFNTSNNYFGSNLSSFSSREEGMSAIRNHHMYRGYTSREDFGSSLGATALDSQKLLHSEKEYHAHKSTYSSDREDMHLVGSSRVPPHANGYKLKTRSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKAFLIRGSSIQASSQVRTYDDSAAVGKHMSDLNDEKSSVSSHNKLYENEPNRSSVPRGNDCLGTKTEITSGTCENYHNGNIGVGQHAFGVEDRMETSKKRTEHDAMHHGDGSEHIKKRVAKDDKIHEMEVDFQPDSSVHKETKALKFFRATLVDLVKELLKPFWHEGRLSKDAHVLIVKKSVDKVVSTLEPHQIPTTEDNAKHYISSCRPKIAKLVQGYVNKYSKP 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00540 675 MobiDBLite consensus disorder prediction 177 220 - -
Trre4g00540 675 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 248 IPR000571 GO:0046872
Trre4g00540 675 MobiDBLite consensus disorder prediction 479 509 - -
Trre4g00540 675 SUPERFAMILY CCCH zinc finger 224 248 IPR036855 GO:0046872
Trre4g00540 675 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 7 376 - -
Trre4g00540 675 MobiDBLite consensus disorder prediction 181 217 - -
Trre4g00540 675 MobiDBLite consensus disorder prediction 492 509 - -
Trre4g00540 675 MobiDBLite consensus disorder prediction 9 49 - -
Trre4g00540 675 MobiDBLite consensus disorder prediction 91 119 - -
Trre4g00540 675 MobiDBLite consensus disorder prediction 1 67 - -
Trre4g00540 675 ProSiteProfiles Zinc finger C3H1-type profile. 224 251 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00540 Trre-Chr4 3793269 3796793 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre4g00540 zf-CCCH 4.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00540 - - cam:101503101 981.859