LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g00539	ATGTCAAATTCAGATTCTCCTGTTGAAGATGATCCATCTCTTCAAGAAGAAGAAGAGGATGACGAAGAAGAAGAAATTGAACAAGTAGAAGAAGAGGAGGAAGAAGAAGATCAAGAAGAGGAAGAACAAGTTGAAGAAGAAGAAGAAGTTGAAGAGGAAGAGGAAGAAGTTGAAGAGGAAGAGGAAGAGGAGGAAGAGGAGGAAGTAGAAACGGTGGAAGTGGAGGACGATGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGCAATAGAGATGGAAGAGGATGAAGAACAAGTTCTAGATTCTATGCATGATACTGTTAAACATAGCAAAGAAACAGTAGAGGTGGAAGAAGAAGAAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAAGAAGAAGAACCAGAAGAAGCAGAAAAAGAAAAGGCAACAGAGATGGAAGAGGAGGAAGAACAAAATACAGTAGTTGAGGAGAAAGATAAAGACAAAGATGAGGTTCCAGATTCTCTTCCCAATGCGGATAAACATAGCAAAGAAATAGTTAAGGTGGAAGAAGAGGAGGAGGAAAAAGAAGAGGAAAAAGAAAAAGAAGCAATAAAGATGGAAGAGGAGGAAAAGCAAGAAACAGCCGTTGAGGAGAAAGATAAAGACAAAGATGAGGTTCCAGATCCTCTTCCCGATGCAGATAAACATAGCAAAGATTCAAGCCAGCATATGGAGCTTGATGGGAAAGAGGAGAATTTGGGGCAAGATTCTTGTGTGTCCGAGAACCCTGAAGTAATACAGCCAGCACATGATATGGAAGAGAATGATGCCATGCTTAAAGCATCTGTTACGTCACATGAAGAATTGACATTGAAAAAGGAGGAGTTCCCCGTGAAACAAGAAGTTTTGAGTCCTCCAAAACCAAGTGAAAACTTGATTCCTGCTGAAGATGGGAAAAATCAAGGCTTAAACATTGATGTTGAAAATTCTGGATATCTTCAGAGGAAAACCTTTGGAGGATGCAGTGAACCAGATTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGGACATTGATTCTAGGGCCACCAAGTTATCTAGTGATACGGGAAAAGATGTGGTTACCGGAATCATACCGAGAGATAATTTTGTTGAGAATGCTGATCGCGGTCAGAACTCTCAGGAGAAAATTACGCAGTCAGAGATGGAGTCACAGGTTGATGTGAAACAAAAGCCGTCAAGGACTAGAAGTCTGTCTCCCAGTGCTGAGATTAAAGATGGAAACAAAAGACCTGCAATTGCATGTGCTTTTTTCGCTAAAGGTTGGTGCATCAGAGGCAGTTCTTGTAGCTTTCTTCATATAAAAGATAGTGTTAATAATACCGACCAGGGGGCTGATGGAGACCTAGTTACTGCACATCAGAAGAGAGAATTGAAATTGGAAAAAGGTGTTAAGGAAAATGTTGACTGGTCAAGAACGAATGAGGGAGAAGCAAGTCCAAGTTGGCATTCATTTCGTGAAAAAGAGAAGTATAGATCTGCATTTAATACATCAAACAATTATTTCGGCTCAAATCTTTCCTCGTTTTCATCCCGTGAAGAGGGAATGTCTGCTATTCGAAACCACCATATGTACAGAGGATATACATCCAGAGAAGATTTTGGTTCATCTTTAGGTGCAACTGCTTTGGACTCTCAAAAGCTTTTGCACAGTGAGAAGGAATATCACGCCCATAAGTCCACTTACTCTTCAGATCGGGAAGATATGCATCTAGTTGGTTCATCTAGGGTTCCACCGCATGCTAATGGATATAAACTAAAAACCCGCTCTTATGATTGGGAACCTTCTGTTCCATTTCGACCATCATTTTTTATCACTTCTATGAATGTATCATCCCCCGGAGATCTTTATGACCCTCTTCGTGATAGCATCGAGATACCTAATATTGGAGATGGGTCTTTGAAAGCTTTTCTAATTCGAGGGTCATCTATCCAGGCTTCATCACAAGTGCGGACATATGATGATTCTGCTGCAGTTGGGAAACACATGTCTGATCTTAATGATGAAAAAAGTTCAGTATCTTCACATAATAAGCTTTATGAAAATGAGCCAAACAGAAGTTCTGTTCCCCGCGGAAATGATTGTCTTGGAACCAAAACAGAAATAACATCAGGAACTTGTGAAAACTACCATAACGGTAACATAGGTGTGGGACAACATGCCTTTGGTGTTGAAGATAGGATGGAAACATCGAAAAAACGGACTGAGCATGATGCCATGCATCATGGTGATGGATCAGAGCACATAAAGAAGAGAGTAGCAAAGGATGATAAAATTCATGAAATGGAGGTTGACTTTCAGCCGGATAGCAGTGTGCACAAAGAAACAAAGGCGCTGAAATTTTTTCGTGCAACCCTTGTTGATCTAGTTAAAGAGTTGCTAAAACCATTTTGGCATGAGGGTCGTCTCAGCAAGGATGCACATGTACTGATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACTTTAGAGCCACACCAAATTCCAACCACTGAAGATAATGCTAAGCATTATATTTCTTCATGTCGGCCGAAAATTGCAAAGTTAGTCCAGGGATATGTCAATAAATATAGCAAGCCTTGA	2658	0.4093	MSNSDSPVEDDPSLQEEEEDDEEEEIEQVEEEEEEEDQEEEEQVEEEEEVEEEEEEVEEEEEEEEEEEVETVEVEDDEEEEEEEEEEEEEEAIEMEEDEEQVLDSMHDTVKHSKETVEVEEEEDEEEEEEEEEEEEEEEEEEEEPEEAEKEKATEMEEEEEQNTVVEEKDKDKDEVPDSLPNADKHSKEIVKVEEEEEEKEEEKEKEAIKMEEEEKQETAVEEKDKDKDEVPDPLPDADKHSKDSSQHMELDGKEENLGQDSCVSENPEVIQPAHDMEENDAMLKASVTSHEELTLKKEEFPVKQEVLSPPKPSENLIPAEDGKNQGLNIDVENSGYLQRKTFGGCSEPDCNSKASLSDVKDIDSRATKLSSDTGKDVVTGIIPRDNFVENADRGQNSQEKITQSEMESQVDVKQKPSRTRSLSPSAEIKDGNKRPAIACAFFAKGWCIRGSSCSFLHIKDSVNNTDQGADGDLVTAHQKRELKLEKGVKENVDWSRTNEGEASPSWHSFREKEKYRSAFNTSNNYFGSNLSSFSSREEGMSAIRNHHMYRGYTSREDFGSSLGATALDSQKLLHSEKEYHAHKSTYSSDREDMHLVGSSRVPPHANGYKLKTRSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKAFLIRGSSIQASSQVRTYDDSAAVGKHMSDLNDEKSSVSSHNKLYENEPNRSSVPRGNDCLGTKTEITSGTCENYHNGNIGVGQHAFGVEDRMETSKKRTEHDAMHHGDGSEHIKKRVAKDDKIHEMEVDFQPDSSVHKETKALKFFRATLVDLVKELLKPFWHEGRLSKDAHVLIVKKSVDKVVSTLEPHQIPTTEDNAKHYISSCRPKIAKLVQGYVNKYSKP	885

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	702	719	-	-
	Trre4g00539	885	Coils	Coil	14	101	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	203	259	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	10	103	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	391	427	-	-
	Trre4g00539	885	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	440	458	IPR000571	GO:0046872
	Trre4g00539	885	ProSiteProfiles	Zinc finger C3H1-type profile.	434	461	IPR000571	GO:0046872
	Trre4g00539	885	PANTHER	PROTEIN FRIGIDA-ESSENTIAL 1	124	884	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	387	430	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	689	719	-	-
	Trre4g00539	885	SUPERFAMILY	CCCH zinc finger	434	458	IPR036855	GO:0046872
	Trre4g00539	885	Coils	Coil	110	169	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	1	272	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	166	194	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	119	165	-	-
	Trre4g00539	885	Coils	Coil	183	224	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	301	329	-	-
	Trre4g00539	885	MobiDBLite	consensus disorder prediction	104	118	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g00539	Trre-Chr4	3793269	3799394	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Trre4g00539		zf-CCCH	5.7e-05	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g00539	-		-	cam:101503101	981.859