Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00534 ATGGATGAAAGTTGGGGTGAGGGAAAGAGAAACTATGAGTACATAGAAGAAAATGAGTATGAAGAAGAAGAAGAACAAGATGTGAGTTATGGAGATGGAAAGAAGAAAAGAGTTGTGAATGATGGTTACAACAAGAAAGGGTCTAAAGCTGGAGGATCAGTGCCACCATGTTGTCAAGTTGATAACTGTAATGTTGATCTAAGTGGTGCTAAGCAGTATCATAAACGCCATAAGGTTTGTGAAAATCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGTCAGCAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTTAAAAAGAAGTTGTAGAAGGCGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAGTGCATCGGAATATCAGGGAGAAATTCATTGA 426 0.3897 MDESWGEGKRNYEYIEENEYEEEEEQDVSYGDGKKKRVVNDGYNKKGSKAGGSVPPCCQVDNCNVDLSGAKQYHKRHKVCENHSKAHSVLISELQQRFCQQCSRFHELSEFDDLKRSCRRRLAGHNERRRKSASEYQGEIH 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00534 141 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Trre4g00534 141 Pfam SBP domain 58 131 IPR004333 GO:0003677
Trre4g00534 141 Gene3D - 48 119 IPR036893 GO:0003677|GO:0005634
Trre4g00534 141 FunFam Squamosa promoter-binding-like protein 14 49 119 - -
Trre4g00534 141 SUPERFAMILY SBT domain 55 135 IPR036893 GO:0003677|GO:0005634
Trre4g00534 141 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 133 IPR044817 GO:0003677
Trre4g00534 141 PIRSF SBP 3 141 IPR017238 GO:0003677|GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00534 Trre-Chr4 3752626 3754823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00534 42 135 SBP-box Gene Family AT2G33810 64.894 3.62e-38 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre4g00534 SBP 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00534 - - gmx:100782285 198.749