Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00530 ATGTTAGCTAACTGTGAGAAAATGGTTGCCATCCCTCCTAACCAATGGCCACAGAATCAGATAGATGATGGTAAAGTAATTATGGAAAAACAAGGTCAAGAGCTTATGCAACAACAAGCACTTAAGTGTCCACGTTGTGATTCATCAAACACAAAATTCTGTTATTACAACAATTACAGTTTGTCACAACCAAGACACTTCTGCAAAGCCTGCAAACGCTATTGGACAAGAGGTGGTACTCTTAGGAATGTTCCTGTTGGTGGTGGCTACAGAAGAAACAATAAAAGCAGTAAAAATAGTACAACTCTCATCAAAAGACCAATATCCACCATTGATTCTACTACTACTACTTCTTCAGCTCCTACTTCAACCTTAAATCATAATATTAGTCCTATGTTTTATGGTTTATCTAGACTTTCAAGTTCATCTGAGTATGATTTTCATCATACTCAGATGAACTCGAATGGACTAGGCGGCTTTTTGTCGTCCGGGTTTGATCATAATGGATTTACTACAAATAATAACAACCATGTTTCAAGATATGATTCAATCTTTAGTTCTGCTTCTTCCTCCTCAACTTCAATGTCAGTTATGCCTTCTGTGTTGAGTTCTACTCTGCTGCAACATAATTTCAACAATGATGGTTTGAAATATAGTCAAGATGCAAGTAGCAATTGTACTTTTCAAGGTTTAGAATTTGATTCACTTGAGCAGATGCAAAGAGCTATAAGTAATATTGGGAATGGAAGTGAGAAAGGGATGAAGAAAGTTGAAGGACAAAACCAGATTGAGCATGTGAGTGGTTTGTATGATCCTTCTTCATTTTTCTGGAATGATCAAGGTGCTAATATTGGTTCATCAGTCACTTCTTTGATCTAG 879 0.3652 MLANCEKMVAIPPNQWPQNQIDDGKVIMEKQGQELMQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNKSSKNSTTLIKRPISTIDSTTTTSSAPTSTLNHNISPMFYGLSRLSSSSEYDFHHTQMNSNGLGGFLSSGFDHNGFTTNNNNHVSRYDSIFSSASSSSTSMSVMPSVLSSTLLQHNFNNDGLKYSQDASSNCTFQGLEFDSLEQMQRAISNIGNGSEKGMKKVEGQNQIEHVSGLYDPSSFFWNDQGANIGSSVTSLI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00530 292 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Trre4g00530 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 31 212 IPR045174 GO:0003700|GO:0006355
Trre4g00530 292 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Trre4g00530 292 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00530 Trre-Chr4 3686746 3687879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00530 1 142 C2C2-Dof Transcription Factor Family AT1G28310 48.408 1.25e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre4g00530 zf-Dof 1.8e-32 No_clan