Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00529 ATGGAGCAAGAAGGTAGTAATGGTGGAAGAAGAGCTGAGTTGAATAGGCAACTTCATGCTCCTTCTGAGCCTAAGCAGTGTCCTAGGTGTGAGTCTTTCAACACTAAGTTCTGTTACTTCAATAACTACAGCTTGGGCCAGCCTCGGTACTTCTGCAAATCATGCAGAAGATACTGGACTATAGGTGGAACATTGAGAAATGTTCCGGTTGGTGGCGGTAGTCGTAAGGCAAAAAGAGCTAAGAACTCACCTTCGGCTTCTGGAAGTAATTCCTCTAGGAATTCTTCTATGTCTCAGTCAATGCTGACGCAGCAGACTGCTGTTCAGTCTGCTGTGGCTGCGATGGCTAAAGACTCTGCTTTGAGTTTGGCTTCGTTTTCCTCTGCTGCACCTTTTTATCAAGGGGGTGGTGGGGTTGGTTACATGTCGCCTTTTGCGGGGTTTAACCAACCTCTGAATCCAAACACTTTTGAGCATTCTCTGAACCTCGGTGGTGTTGGCTCTTCAAATTTAAGTCTTTTACAAGGCTTTAATGCTGCTGCTATTGCTGCTCTTGGGAGTTCATCCCAAGGGCCAAATCGTCCATCCCTGCAACAGTACTATCAAATGGGTGGTAATGGTGGAACAATGTTCACCTCACAACAAGGTTTGAACTTGATTCCCCCACCTACCATGTCCAATGCTAGTGCTGCTACTTGGCCTCAGAGCTTCTTCAACAATGGTACTATCAACACCACTTCCATTCCTAGTGGTAATTCTGATAGGAATGGTAGTGGTGCTGGTGGTAGTGATATCGGTGGTGCTGGTGTTGGTGTTGGTGCTGGTGCTGGAGCTGGAGTTGGTGCTGAAGGTTCTGCTGCTTTGACTCCAAGTCAATGGCCGGATTTGTCCGGATTCAACGCTCCTCAGTGA 912 0.4737 MEQEGSNGGRRAELNRQLHAPSEPKQCPRCESFNTKFCYFNNYSLGQPRYFCKSCRRYWTIGGTLRNVPVGGGSRKAKRAKNSPSASGSNSSRNSSMSQSMLTQQTAVQSAVAAMAKDSALSLASFSSAAPFYQGGGGVGYMSPFAGFNQPLNPNTFEHSLNLGGVGSSNLSLLQGFNAAAIAALGSSSQGPNRPSLQQYYQMGGNGGTMFTSQQGLNLIPPPTMSNASAATWPQSFFNNGTINTTSIPSGNSDRNGSGAGGSDIGGAGVGVGAGAGAGVGAEGSAALTPSQWPDLSGFNAPQ 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00529 303 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Trre4g00529 303 Pfam Dof domain, zinc finger 24 79 IPR003851 GO:0003677|GO:0006355
Trre4g00529 303 MobiDBLite consensus disorder prediction 80 103 - -
Trre4g00529 303 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Trre4g00529 303 MobiDBLite consensus disorder prediction 70 103 - -
Trre4g00529 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 183 IPR045174 GO:0003700|GO:0006355
Trre4g00529 303 MobiDBLite consensus disorder prediction 242 303 - -
Trre4g00529 303 MobiDBLite consensus disorder prediction 1 25 - -
Trre4g00529 303 MobiDBLite consensus disorder prediction 242 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00529 Trre-Chr4 3677161 3678072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00529 21 79 C2C2-Dof Transcription Factor Family AT4G00940 79.661 3.82e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre4g00529 zf-Dof 9.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00529 - - tpra:123905519 366.696