Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00523 ATGAAGTTCAATCCAAGGGTTTCCAGCAGCCGCCGCAAGAGCAGGAAGGCACATTTCACAGCACCATCAAGTCTCTGCCGTGTGCTAATGAGCGCACCACTCTCCGGCGACCTTCGATCCAAATACAACGTTCGTTCATTACCTGTTCGCAAAGACGACGAAGTTCAAGTCGTTAGAGGAACATTCAAAGGACGTGAAGGAAAAATTGTTCAAGTTTATCGGAAAAAATGGGTGATTCATATTGAACGTATAACTCGTGAGAAAGTTAACGGTCAAATAGTCGACGTTGGAGTCAACCCTTCAAAAGTTGTTATCACTAAGATTCGTTTGGATAAGGATCGGAAATCGTTGCTTGATCGGAAAGCCAAGGGTCGTGCTGCTGCTGATAAGGAAAAGGGTACTAAGTTTGCTCCCGAAGATATTATGCAAAACGTTGATTAA 441 0.4399 MKFNPRVSSSRRKSRKAHFTAPSSLCRVLMSAPLSGDLRSKYNVRSLPVRKDDEVQVVRGTFKGREGKIVQVYRKKWVIHIERITREKVNGQIVDVGVNPSKVVITKIRLDKDRKSLLDRKAKGRAAADKEKGTKFAPEDIMQNVD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00523 146 NCBIfam 50S ribosomal protein L24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Trre4g00523 146 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Trre4g00523 146 MobiDBLite consensus disorder prediction 120 146 - -
Trre4g00523 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Trre4g00523 146 Gene3D - 1 143 IPR014722 -
Trre4g00523 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Trre4g00523 146 MobiDBLite consensus disorder prediction 120 137 - -
Trre4g00523 146 FunFam 60S ribosomal protein L26 1 144 - -
Trre4g00523 146 Pfam KOW motif 51 82 IPR005824 -
Trre4g00523 146 SMART kow_9 48 75 IPR005824 -
Trre4g00523 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Trre4g00523 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 141 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00523 Trre-Chr4 3610719 3611159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00523 1 146 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 82.877 3.68e-89 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00523 K02898 - mnt:21392730 239.58