Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre4g00521 | ATGAAGTTCAACGTTTCAAATCCTACCACTGGATGCCAGAAGAAGCTGGAAATCGATGATGATCAGAAGCTGCGAGCTTTTTGGGACAAGAGGATCTCTCAAGAAGTTTTGGGTGATGCTTTGGGTGAGGAATTCAAAGGCTATGTTTTTAAAATCACTGGAGGATGTGACAAACAAGGTTTTCCAATGAAGCAGGGTGTGTTAACTCCTGGGCGTGTTCGCCTTTTGCTTCACCGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGTTGCATTGTCAGCCCAGATCTCTCTGTTCTCAACTTGGTTATTGTGAAGAAGGGTGACAATGATTTGCCAGGTTTGACAGATGTTGAAAAGCCAAGAATGAGGGGTCCCAAAAGAGCTTCCAAAATCCGTAAGCTTTTCAATTTGTCCAAGGAGGATGATGTCAGGAAGTATGTCAACACATACCGTCGTACTTTCACAACCAAAGCTGGGAAAAAGGTGAGCAAAGCACCAAAGATTCAGCGCCTGGTCACGCCCCTGACACTTCAAAGAAAGAGGGCAAGAATTGCTGATAAGAAGAAAAGAATTGCCAAAGCTAAGTCAGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCCAGGTTGAAGGAGCAAAGGGAACGACGTAGTGAGAGTTTGGCTAAGAAGAGATCAAGGCTCTCCACTGCAAAGCCAGGTGTCACCGCATAG | 747 | 0.4632 | MKFNVSNPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKKRSRLSTAKPGVTA | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre4g00521 | 248 | Coils | Coil | 189 | 216 | - | - | |
| Trre4g00521 | 248 | MobiDBLite | consensus disorder prediction | 222 | 237 | - | - | |
| Trre4g00521 | 248 | Pfam | Ribosomal protein S6e | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Trre4g00521 | 248 | MobiDBLite | consensus disorder prediction | 222 | 248 | - | - | |
| Trre4g00521 | 248 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 1 | 239 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Trre4g00521 | 248 | Gene3D | - | 133 | 234 | - | - | |
| Trre4g00521 | 248 | PIRSF | RPS6e | 1 | 247 | IPR014401 | GO:0003735|GO:0005840|GO:0006412 | |
| Trre4g00521 | 248 | ProSitePatterns | Ribosomal protein S6e signature. | 52 | 63 | IPR018282 | GO:0003735|GO:0005840|GO:0006412 | |
| Trre4g00521 | 248 | SMART | Ribosomal_S6e_2 | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre4g00521 | Trre-Chr4 | 3596682 | 3599103 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre4g00521 | 1 | 242 | Cytoplasmic Ribosomal Protein Gene Family | AT5G10360 | 73.554 | 3.02e-119 | 337 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre4g00521 | K02991 | - | gmx:100786559 | 432.95 |