Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00520 ATGGACTCAAACAATAATCATCCTCCATGGAAGAATGAGGCAATGTTTCGCTCCTACGTGCATGAATATATGATCAAAAGAGGAATGCATAACACCGCTGAGATTTTCATGAATGAAGCTAACGTTCCCCAAACTCATCCTACTGACATGCAATTTGTGGATTCAATGTTTGATGATTCTCCGGAAGGAGTCCTGCATGAATGGTGGTCTGTTTTCTCTGAGGTATTTTCATCCAGACTAAGGAGTCATCAGGAGTCTCAGCCACAATCCCCTAATATGGTCCCAAGAATGGCGGATACTTCAACGAATACATCCTCTTTTAGAATCCCTCAAATGCCAATGAATGAGCAGAGATCTCAACAATTTCAAGCCAGCTCTAGCTTTAACAACATGGCACAGACAGCTTCTAGATTGATGCCTCTGAGACTGCACAATAATAATCATCCCCTTGGAAATTTGGCTGAACATATTGATCCAAGTTTGGTTCCTCTTATCAATGAAAATGATCCGAACTTCTCACCAATGAGTTCAAACCATCCATTGCAAGATGTAGGCAACCAGCTCCAGAAGCAAGTCTATAGGGACAATGGAATTGTTATGCGTGTGGGGCGTCCCGTACCTAGTAACCCTCCGGATGTAAGACAAAAAGCAATGCTGCCTTCAGGTGGACCTCACGTAACAAATAACTATAAAGTTCCTAATCTTGTGCCAATAAATGGAGTGCCATTAAATAACCAGATGCTAACTTCTCTTTTGCAATTGCGAAACAATGGACAGCAGTTTCAAGTGTTGAACGCACAAAATCAGGAAGCAATCCGGACTCAAGCCCTTGAGAGTACTCCTAACATTGAGACTTTCGCAGCTCCTATAAACTCTACCAGATGTGACGGTCAATATCTAGATATTCCCAAGGCTGAATCAAGTAATAATGATAGGGAGATGATGGACCAAACCATTAGAGCTGAAGAACCTCAATGCAAGCAGGATCAGCAAATGCAGTCCCAAAATCTCGATAATGGCAGAAAGAGAAAGATAGTAGGACCCTTAGGAGCTGGAGAGTGTGATGTCCCGGACCGTGTGGATGCAGCAGATGGAAAACCAGCAGACGAAAATGTGGATTCCTACTTTTCTATTGAAAATGGAAATGCTGATCATAAAACTACGCCTTTCAGCAATCTGAAACGAATTTCAGGAACAGACATGAGAAGTGGAAATAAAGGTTTTTCATTCCAAGAGGTTGGATGCCTTCACTCGAGCAAAAACAAGGTTTTGGCCAGCCATTTTTCATCAAATGGAAAATTTTTGGCAAGTGCTGGACATGACAAGAAGGTTTTTATTTGGAACATGGAAACTTTTCAAAATAATGCTACCGAGGAAACACATTCACTTCTCATTACAGATGTTCGGTTTAGACCAGGCTCAAATATATTTGCGACATCTTCCTTTGATAAATCTATAAGAGTATGGGATACAAACAGACCAAACAAATCATTATTCAAACTTTCTGGGCATTCTGAACAAGTAATGTCACTGGACTTCCACCCAAGAAAGGCAGACCTTCTTTGCTCGTGTGATGGCAATGATATAATTCGTCTGTGGAATGTGAACCGAGGTTCTTGCAAGCATGTAACTAAGGGAGGTAGTAAACAAGTTAGATTCCAGCCTCTTTATGGGAAGCTTCTAGGTACTGCTACTGGAAATAATCTCAAAATATTTGATGTTGAGGCTGATAAAGTTGTTTACAATCTAAAGGGACATGATAAAGATGTTGTTTCCATTTGTTGGGATATACATGGAAAGTATATTGCCTCTGTCAGTGAAGATAGTGCACGAGTCTGGTCCGACGGAAAATGCATCAATGAGTTGCTTTCAAACGGGAACAAGTTTCAGTCGTGCATATTTCATCCAGCATATTCTAACCTCTTAGTTATTGGTGGCTATCAGTCCCTTGAATTGTGGAGTCCAACGGAGGGTAATAAAACAATATCAATTTCTGCGCACAAGGGATTAATTACAGGACTAGCAGATTCACCACAAAATGATTTGATTGCCTCGGCTAGCCATGATTGCCTTGTGAAACTATGGAGATAA 2091 0.4094 MDSNNNHPPWKNEAMFRSYVHEYMIKRGMHNTAEIFMNEANVPQTHPTDMQFVDSMFDDSPEGVLHEWWSVFSEVFSSRLRSHQESQPQSPNMVPRMADTSTNTSSFRIPQMPMNEQRSQQFQASSSFNNMAQTASRLMPLRLHNNNHPLGNLAEHIDPSLVPLINENDPNFSPMSSNHPLQDVGNQLQKQVYRDNGIVMRVGRPVPSNPPDVRQKAMLPSGGPHVTNNYKVPNLVPINGVPLNNQMLTSLLQLRNNGQQFQVLNAQNQEAIRTQALESTPNIETFAAPINSTRCDGQYLDIPKAESSNNDREMMDQTIRAEEPQCKQDQQMQSQNLDNGRKRKIVGPLGAGECDVPDRVDAADGKPADENVDSYFSIENGNADHKTTPFSNLKRISGTDMRSGNKGFSFQEVGCLHSSKNKVLASHFSSNGKFLASAGHDKKVFIWNMETFQNNATEETHSLLITDVRFRPGSNIFATSSFDKSIRVWDTNRPNKSLFKLSGHSEQVMSLDFHPRKADLLCSCDGNDIIRLWNVNRGSCKHVTKGGSKQVRFQPLYGKLLGTATGNNLKIFDVEADKVVYNLKGHDKDVVSICWDIHGKYIASVSEDSARVWSDGKCINELLSNGNKFQSCIFHPAYSNLLVIGGYQSLELWSPTEGNKTISISAHKGLITGLADSPQNDLIASASHDCLVKLWR 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00520 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Trre4g00520 696 SMART WD40_4 615 654 IPR001680 GO:0005515
Trre4g00520 696 SMART WD40_4 494 534 IPR001680 GO:0005515
Trre4g00520 696 SMART WD40_4 576 614 IPR001680 GO:0005515
Trre4g00520 696 SMART WD40_4 657 696 IPR001680 GO:0005515
Trre4g00520 696 SMART WD40_4 451 490 IPR001680 GO:0005515
Trre4g00520 696 SMART WD40_4 537 573 IPR001680 GO:0005515
Trre4g00520 696 SMART WD40_4 409 448 IPR001680 GO:0005515
Trre4g00520 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 543 IPR001680 GO:0005515
Trre4g00520 696 Pfam LisH 18 40 IPR006594 GO:0005515
Trre4g00520 696 CDD WD40 412 696 - -
Trre4g00520 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 416 451 - -
Trre4g00520 696 ProSitePatterns Trp-Asp (WD) repeats signature. 435 449 IPR019775 -
Trre4g00520 696 MobiDBLite consensus disorder prediction 82 103 - -
Trre4g00520 696 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Trre4g00520 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 539 - -
Trre4g00520 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 696 IPR001680 GO:0005515
Trre4g00520 696 SUPERFAMILY WD40 repeat-like 409 695 IPR036322 GO:0005515
Trre4g00520 696 Pfam WD domain, G-beta repeat 414 448 IPR001680 GO:0005515
Trre4g00520 696 Pfam WD domain, G-beta repeat 659 695 IPR001680 GO:0005515
Trre4g00520 696 Pfam WD domain, G-beta repeat 497 534 IPR001680 GO:0005515
Trre4g00520 696 Pfam WD domain, G-beta repeat 580 614 IPR001680 GO:0005515
Trre4g00520 696 Pfam WD domain, G-beta repeat 459 490 IPR001680 GO:0005515
Trre4g00520 696 ProSiteProfiles LIS1 homology (LisH) motif profile. 12 44 IPR006594 GO:0005515
Trre4g00520 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 416 457 IPR001680 GO:0005515
Trre4g00520 696 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 458 490 - -
Trre4g00520 696 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 696 IPR044716 GO:0003714
Trre4g00520 696 Gene3D - 553 696 IPR015943 GO:0005515
Trre4g00520 696 Gene3D - 385 552 IPR015943 GO:0005515
Trre4g00520 696 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 490 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00520 Trre-Chr4 3587144 3593115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00520 435 613 U-box Gene Family AT2G33340 29.101 3.98e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre4g00520 WD40 9.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00520 - - gsj:114387334 797.349