Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00519 ATGGACTCAAACAATAATCATCCTCCATGGAAGAATGAGGCAATGTTTCGCTCCTACGTGCATGAATATATGATCAAAAGAGGAATGCATAACACCGCTGAGATTTTCATGAATGAAGCTAACGTTCCCCAAACTCATCCTACTGACATGCAATTTGTGGATTCAATGTTTGATGATTCTCCGGAAGGAGTCCTGCATGAATGGTGGTCTGTTTTCTCTGAGGTATTTTCATCCAGACTAAGGAGTCATCAGGAGTCTCAGCCACAATCCCCTAATATGGTGGTCCCAAGAATGGCGGATACTTCAACGAATACATCCTCTTTTAGAATCCCTCAAATGCCAATGAATGAGCAGAGATCTCAACAATTTCAAGCCAGCTCTAGCTTTAACAACATGGCACAGACAGCTTCTAGATTGATGCCTCTGAGACTGCACAATAATAATCATCCCCTTGGAAATTTGGCTGAACATATTGATCCAAGTTTGGTTCCTCTTATCAATGAAAATGATCCGAACTTCTCACCAATGAGTTCAAACCATCCATTGCAAGATGTAGGCAACCAGCTCCAGAAGCAAGTCTATAGGGACAATGGAATTGTTATGCGTGTGGGGCGTCCCGTACCTAGTAACCCTCCGGATGTAAGACAAAAAGCAATGCTGCCTTCAGGTGGACCTCACGTAACAAATAACTATAAAGTTCCTAATCTTGTGCCAATAAATGGAGTGCCATTAAATAACCAGATGCTAACTTCTCTTTTGCAATTGCGAAACAATGGACAGCAGTTTCAAGTGTTGAACGCACAAAATCAGGAAGCAATCCGGACTCAAGCCCTTGAGAGTACTCCTAACATTGAGACTTTCGCAGCTCCTATAAACTCTACCAGATGTGACGGTCAATATCTAGATATTCCCAAGGCTGAATCAAGTAATAATGATAGGGAGATGATGGACCAAACCATTAGAGCTGAAGAACCTCAATGCAAGCAGGATCAGCAAATGCAGTCCCAAAATCTCGATAATGGCAGAAAGAGAAAGATAGTAGGACCCTTAGGAGCTGGAGAGTGTGATGTCCCGGACCGTGTGGATGCAGCAGATGGAAAACCAGCAGACGAAAATGTGGATTCCTACTTTTCTATTGAAAATGGAAATGCTGATCATAAAACTACGCCTTTCAGCAATCTGAAACGAATTTCAGGAACAGACATGAGAAGTGGAAATAAAGGTTTTTCATTCCAAGAGGTTGGATGCCTTCACTCGAGCAAAAACAAGGTTTTGGCCAGCCATTTTTCATCAAATGGAAAATTTTTGGCAAGTGCTGGACATGACAAGAAGGTTTTTATTTGGAACATGGAAACTTTTCAAAATAATGCTACCGAGGAAACACATTCACTTCTCATTACAGATGTTCGGTTTAGACCAGGCTCAAATATATTTGCGACATCTTCCTTTGATAAATCTATAAGAGTATGGGATACAAACAGACCAAACAAATCATTATTCAAACTTTCTGGGCATTCTGAACAAGTAATGTCACTGGACTTCCACCCAAGAAAGGCAGACCTTCTTTGCTCGTGTGATGGCAATGATATAATTCGTCTGTGGAATGTGAACCGAGGTTCTTGCAAGCATGTAACTAAGGGAGGTAGTAAACAAGTTAGATTCCAGCCTCTTTATGGGAAGCTTCTAGGTACTGCTACTGGAAATAATCTCAAAATATTTGATGTTGAGGCTGATAAAGTTGTTTACAATCTAAAGGGACATGATAAAGATGTTGTTTCCATTTGTTGGGATATACATGGAAAGTATATTGCCTCTGTCAGTGAAGATAGTGCACGAGTCTGGTCCGACGGAAAATGCATCAATGAGTTGCTTTCAAACGGGAACAAGTTTCAGTCGTGCATATTTCATCCAGCATATTCTAACCTCTTAGTTATTGGTGGCTATCAGTCCCTTGAATTGTGGAGTCCAACGGAGGGTAATAAAACAATATCAATTTCTGCGCACAAGGGATTAATTACAGGACTAGCAGATTCACCACAAAATGATTTGATTGCCTCGGCTAGCCATGATTGCCTTGTGAAACTATGGAGATAA 2094 0.4097 MDSNNNHPPWKNEAMFRSYVHEYMIKRGMHNTAEIFMNEANVPQTHPTDMQFVDSMFDDSPEGVLHEWWSVFSEVFSSRLRSHQESQPQSPNMVVPRMADTSTNTSSFRIPQMPMNEQRSQQFQASSSFNNMAQTASRLMPLRLHNNNHPLGNLAEHIDPSLVPLINENDPNFSPMSSNHPLQDVGNQLQKQVYRDNGIVMRVGRPVPSNPPDVRQKAMLPSGGPHVTNNYKVPNLVPINGVPLNNQMLTSLLQLRNNGQQFQVLNAQNQEAIRTQALESTPNIETFAAPINSTRCDGQYLDIPKAESSNNDREMMDQTIRAEEPQCKQDQQMQSQNLDNGRKRKIVGPLGAGECDVPDRVDAADGKPADENVDSYFSIENGNADHKTTPFSNLKRISGTDMRSGNKGFSFQEVGCLHSSKNKVLASHFSSNGKFLASAGHDKKVFIWNMETFQNNATEETHSLLITDVRFRPGSNIFATSSFDKSIRVWDTNRPNKSLFKLSGHSEQVMSLDFHPRKADLLCSCDGNDIIRLWNVNRGSCKHVTKGGSKQVRFQPLYGKLLGTATGNNLKIFDVEADKVVYNLKGHDKDVVSICWDIHGKYIASVSEDSARVWSDGKCINELLSNGNKFQSCIFHPAYSNLLVIGGYQSLELWSPTEGNKTISISAHKGLITGLADSPQNDLIASASHDCLVKLWR 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00519 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 540 - -
Trre4g00519 697 SUPERFAMILY WD40 repeat-like 410 696 IPR036322 GO:0005515
Trre4g00519 697 Pfam LisH 18 40 IPR006594 GO:0005515
Trre4g00519 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 459 491 - -
Trre4g00519 697 SMART WD40_4 577 615 IPR001680 GO:0005515
Trre4g00519 697 SMART WD40_4 658 697 IPR001680 GO:0005515
Trre4g00519 697 SMART WD40_4 495 535 IPR001680 GO:0005515
Trre4g00519 697 SMART WD40_4 616 655 IPR001680 GO:0005515
Trre4g00519 697 SMART WD40_4 538 574 IPR001680 GO:0005515
Trre4g00519 697 SMART WD40_4 452 491 IPR001680 GO:0005515
Trre4g00519 697 SMART WD40_4 410 449 IPR001680 GO:0005515
Trre4g00519 697 CDD WD40 413 697 - -
Trre4g00519 697 ProSiteProfiles LIS1 homology (LisH) motif profile. 12 44 IPR006594 GO:0005515
Trre4g00519 697 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Trre4g00519 697 ProSitePatterns Trp-Asp (WD) repeats signature. 436 450 IPR019775 -
Trre4g00519 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 491 IPR001680 GO:0005515
Trre4g00519 697 Gene3D - 386 552 IPR015943 GO:0005515
Trre4g00519 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 697 IPR001680 GO:0005515
Trre4g00519 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 458 IPR001680 GO:0005515
Trre4g00519 697 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 544 IPR001680 GO:0005515
Trre4g00519 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 697 - -
Trre4g00519 697 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 697 IPR044716 GO:0003714
Trre4g00519 697 Gene3D - 553 697 IPR015943 GO:0005515
Trre4g00519 697 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 452 - -
Trre4g00519 697 Pfam WD domain, G-beta repeat 460 491 IPR001680 GO:0005515
Trre4g00519 697 Pfam WD domain, G-beta repeat 581 615 IPR001680 GO:0005515
Trre4g00519 697 Pfam WD domain, G-beta repeat 415 449 IPR001680 GO:0005515
Trre4g00519 697 Pfam WD domain, G-beta repeat 660 696 IPR001680 GO:0005515
Trre4g00519 697 Pfam WD domain, G-beta repeat 498 535 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00519 Trre-Chr4 3587144 3593115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00519 436 614 U-box Gene Family AT2G33340 29.101 3.99e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre4g00519 WD40 9.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00519 - - gsj:114387334 798.505