Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00517 ATGGACTCAAACAATAATCATCTTCCATGGAAGAATGAGGCAACGTTTCACCGCTATGTGCATGAATATATGATCAAAAGAGGAATGCATAACTCCGCTGAGATTTTCATGAACGAAGCTAACGTTCCCGAAACTCATCCTATTGACATGCAATTTGTGGATTCAATGTTTGATGATTCTTCGGAAGGAGTCCTGCATGAATGGTGGTCTATTTTCTCTGAGGTATTTTTATCCAAACTAAGGAGTCGTCAGGAGTCTGAACCACAGTCCCCTAATATGGCGATCCCGGGAATGATCGATACTTCAACGAATATATCCTTTTTTAGAATCCCTCAAATGTCGATGAATGAGCAGAGACCTCAACAATTTCAAGCCAGCTCTAGCTTTAACATGATGGCACAAACAACTTCTAGATTGATGCCTCCGAGACTGCACAATAATAATCCCCTTGAAAATTTGGCTGAACATATTGATCCAAGTTTGGTTGCTCATATGAATGAAAATGATCCGAACTTCTTCTCACGGATGAGTTCAAAGTAA 540 0.4 MDSNNNHLPWKNEATFHRYVHEYMIKRGMHNSAEIFMNEANVPETHPIDMQFVDSMFDDSSEGVLHEWWSIFSEVFLSKLRSRQESEPQSPNMAIPGMIDTSTNISFFRIPQMSMNEQRPQQFQASSSFNMMAQTTSRLMPPRLHNNNPLENLAEHIDPSLVAHMNENDPNFFSRMSSK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00517 179 ProSiteProfiles LIS1 homology (LisH) motif profile. 12 44 IPR006594 GO:0005515
Trre4g00517 179 Pfam LisH 18 40 IPR006594 GO:0005515
Trre4g00517 179 SMART Lish 12 44 IPR006594 GO:0005515
Trre4g00517 179 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 140 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00517 Trre-Chr4 3582743 3584821 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre4g00517 LisH 1.1e-05 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00517 - - psat:127082017 162.54