LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g00512	ATGGAGAACAACCCTAGTTCATCAAGAGTTGATAGAAAAATCATTGAGAAGAATAGAAGAATTCAAATGAAAGATCTCCACAACAAGCTCAACTCACTTCTGCCCCATCAAACCTCAAAGGAAGCTATTTCAATGCCGGATAAGCTAGAGGAAGCAACAAACTACATAAAGAAATTACAGATCAACTTGGAGAAAATGAAGGAAAAGAAGAATTTTCTATTAGGAATTGAAAGGTCAACAAATGTGAACATGGATAGAAACAAGAACTTGGGATTAAAATCTCCAAAAATTGAGATCCAGCAATTTGGTTTAGTCTTAGAGGTTGTTCTAATAACATGTTTTGATTCTCAGTTTTTGTTCAATGAAACAATTCGTGTTCTTCATGAAGAAGGAGTTGATATTGTTAATGCTAGTTATAAAGTCAATGAAGATTCTGTTTTCCATTCAATACATTGTCAGGTAGGAGAGTTTGGTAATGAAGCTGCAAGGATATCTGAGAAATTGAAGAAGTTTATTCTTGATTATTAG	528	0.3333	MENNPSSSRVDRKIIEKNRRIQMKDLHNKLNSLLPHQTSKEAISMPDKLEEATNYIKKLQINLEKMKEKKNFLLGIERSTNVNMDRNKNLGLKSPKIEIQQFGLVLEVVLITCFDSQFLFNETIRVLHEEGVDIVNASYKVNEDSVFHSIHCQVGEFGNEAARISEKLKKFILDY	175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g00512	175	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	7	59	IPR011598	GO:0046983
	Trre4g00512	175	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	5	73	IPR036638	GO:0046983
	Trre4g00512	175	Pfam	Helix-loop-helix DNA-binding domain	9	60	IPR011598	GO:0046983
	Trre4g00512	175	Coils	Coil	49	76	-	-
	Trre4g00512	175	PANTHER	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	7	171	-	-
	Trre4g00512	175	FunFam	Transcription factor bHLH162	1	85	-	-
	Trre4g00512	175	Gene3D	-	1	90	IPR036638	GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g00512	Trre-Chr4	3525298	3526305	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g00512	3	172	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G20970	43.333	1.11e-45	147

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Trre4g00512		HLH	6.4e-08	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g00512	-		-	gmx:100814407	244.973