Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00495 ATGGCACTTCAACATTGTTTTTCACATGAATTGAAAACCATTCCAAATTCCATGCCAGAAGCAGAAAATTCCAATGGTTGTTTTGATTGCAACATCTGTTTAGACTTTGCGCACGAGCCGGTAGTCACCCTTTGTGGTCACCTTTACTGTTGGCATTGCATCTACAAGTGGCTCCATGTACAGAGTGATGATTCTCTTGGAGTCGACGAACACCCACAATGCCCTGTATGCAAAGATGATATATCACATACCACAATGATCCCATTGTATGGCCGCGGCGGCCATGCTCCACTGAGTGCGAAATCACATTGTGATGATAGTTTTATACCACCAAGACCAACTGCTTCAGGTGCTCAAGCTCTTTTGGCAAAAGCATCTCAAAGCGAACAGCAGCAGCGGCTTCCGTATCGTAATCCTTATCGGGGTCAACATTTAAACTCTTCTTTGTACCAACAAGAGGATGATGGCACATCACAAATGCTTAATCTTCGTGCCTCCATGACCTCAGGATCTCACCACCATCCTTTGGTCGGGATGTTTGGGGAGATGGTTTTTGCTGGAGTGTTTGCCAACTCGCCGAATTCTTATCAGCAGGCAGGAAGTAATAGCTCTAGATTAAGAAGGGAAGAGTTCCAGACTGATAAATTTTTGAACAGAATTACAAATTTTCTGTTTTGCTGCTTTCTTCTGTGTCTTATTGTCTTCTGA 708 0.4364 MALQHCFSHELKTIPNSMPEAENSNGCFDCNICLDFAHEPVVTLCGHLYCWHCIYKWLHVQSDDSLGVDEHPQCPVCKDDISHTTMIPLYGRGGHAPLSAKSHCDDSFIPPRPTASGAQALLAKASQSEQQQRLPYRNPYRGQHLNSSLYQQEDDGTSQMLNLRASMTSGSHHHPLVGMFGEMVFAGVFANSPNSYQQAGSNSSRLRREEFQTDKFLNRITNFLFCCFLLCLIVF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00495 235 ProSiteProfiles Zinc finger RING-type profile. 30 78 IPR001841 -
Trre4g00495 235 SUPERFAMILY RING/U-box 26 90 - -
Trre4g00495 235 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 IPR018957 GO:0046872
Trre4g00495 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 232 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre4g00495 235 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 128 - -
Trre4g00495 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 91 IPR013083 -
Trre4g00495 235 SMART ring_2 30 77 IPR001841 -
Trre4g00495 235 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00495 Trre-Chr4 3373734 3374441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00495 23 221 C3H Transcription Factor Family AT4G27470 41.546 5.84e-42 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00495 K10666 - gmx:100816864 300.827