Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00478 ATGAGGTGTGGTTGCTTTAGAAGATTATCTATAAAGAAGGAAAAACGTCCTTCTAAAAATAATTATATTTCTAGTGAAATTGAAGGATATCCTTTGGATAATATTAAGCATTTTTCTGATAAAGAATTGTGTTTGGCAACTGATAATTATCATTTAATCAATAAGATAGGAAGAGGAGGTTTTGGAACTGTTTTTCAGGGAACATTAAAAGATGGAAGAAAGGTAGCAGTGAAGCCACTTTCTGTAGGATCAAAGCAAGGAGTTCGCGAATTTTTAACCGAAATTAATACCTTATCATACGTTAAACACGAAAACCTTGTTGAATTGGTTGGTTTCTGCGTTCAAGGACCTAATCGTACAGTCGTCTATGAGTATGTCGAAAATGGCAACCTTCATACTGCATTACTTGGAAGAAAGAAATCAAATATCAAACTAGAGTGGACAAAACGATCTGCTATTTGCGTCGGTACGGCTAAAGGACTTGCATATCTTCATGAAGAACTTCCACAACATATTGTACATAGAGACATCAAAGCTAGTAATGTACTACTTGATAAAGACTTTAATCCCAAAATAGGTGATTTTGGTATGGCCAAATTATTTCCAGATGATATCACTCACATCAGCACAAGAATCGCAGGAACAACTGGTTACTTAGCACCAGAATATGCATTAGGTGGACAATTAACTAAGAAAGCTGATGTATACAGCTTTGGAGTTCTTTTACTTGAAATAATAAGTGGCAAAAGCAGCTCAAGGACAAATTGGGAAGGATCACAAAAATCCCTCTTAGAATGGGCATGGCATCTTCATGAAGAGGAGAAATGGTTGGAGCTAGTAGATAAAGACATGGAAGAATTTTCTGAGAAAGATGTAATCAAGTACATTAAGGTTGCTCTTTTCTGCACACAAGCAGCAGCAAAAAGAAGGCCATTGATGACTCAAGTGGTTGATATGCTCACTAAGGATATTCAACTCAATGAGAAACAACTAACAGCACCAGGATTATTCAATACTGATCTTGGAGAATCTTCTCAAAAGAAATCAAACCCTGAATCTTTAGTTTATCACACTAGTTCTACTGAGGCTCTGGCTAGTATTACTGAGGTCACGGCCAGGTGA 1122 0.3654 MRCGCFRRLSIKKEKRPSKNNYISSEIEGYPLDNIKHFSDKELCLATDNYHLINKIGRGGFGTVFQGTLKDGRKVAVKPLSVGSKQGVREFLTEINTLSYVKHENLVELVGFCVQGPNRTVVYEYVENGNLHTALLGRKKSNIKLEWTKRSAICVGTAKGLAYLHEELPQHIVHRDIKASNVLLDKDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLLLEIISGKSSSRTNWEGSQKSLLEWAWHLHEEEKWLELVDKDMEEFSEKDVIKYIKVALFCTQAAAKRRPLMTQVVDMLTKDIQLNEKQLTAPGLFNTDLGESSQKKSNPESLVYHTSSTEALASITEVTAR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00478 373 SUPERFAMILY Protein kinase-like (PK-like) 24 320 IPR011009 -
Trre4g00478 373 MobiDBLite consensus disorder prediction 337 356 - -
Trre4g00478 373 Pfam Protein tyrosine and serine/threonine kinase 51 320 IPR001245 GO:0004672|GO:0006468
Trre4g00478 373 Gene3D Transferase(Phosphotransferase) domain 1 126 335 - -
Trre4g00478 373 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Trre4g00478 373 FunFam Putative LRR receptor-like serine/threonine-protein kinase 126 332 - -
Trre4g00478 373 SMART serkin_6 50 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00478 373 CDD STKc_IRAK 56 322 - -
Trre4g00478 373 ProSiteProfiles Protein kinase domain profile. 50 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00478 373 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 34 348 - -
Trre4g00478 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Trre4g00478 373 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 29 125 - -
Trre4g00478 373 Gene3D Phosphorylase Kinase; domain 1 21 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00478 Trre-Chr4 3304141 3306523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00478 9 335 Receptor kinase-like Gene Family AT1G56120 48.632 2.84e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00478 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00478 - - mtr:11430773 629.787