Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00473 ATGTCTGACATCGAAAATCACGCAAATCATGCTGCTTCTTCCCCCGATAAGCCAAGTTCCCGGGGATCTGGTCATGAGAGCACAAGGATGAGAAGGAGAGATGGAGACAGGAAAACTTTTCATGACCACCGTGGTGACCGTCACAGAGATAATAAGTATGAGGGTTTTAAAGGAAGAGATAAATATGACAGTTATAATCGTCAACGTGGCCGTGATTATGATAGGCATAATGACTATGATCGGGACAGAGATACAAGGAGCAGATATGGAGCACATTCAAAGAGGTCCAGGAGGGAATCTAGATCTAGGTCACGGTCCAGATCCCCTTCTCAATCTGAAGGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACGGGTGTAACACCCACCGTTTCAGGGCAAATGCCGGGGATTGCTCATATGATTCAAGGAGCTACCCAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCATGCTCGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTTACCAACGAGCAGACAATTGCATCTTTCTTTAGCCATGTCATGCTTGCTATTGGTGGAAATTCTGCTGGAACAGGTGATTCGGTTGTCAATGTGTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCACTGGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTTCAAACCTTAACTTGTCTGCCGTTGGACTTACTGCAGGAACAATTGGTGGATCCGAGGGACTTGATCGCATATTTGTGGGTGGACTGCCGTACTACTTTACTGAAGTACAAATGAGGGAATTGCTTCAAGCTTTTGGTCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGACACGGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCTGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAACCAGAAGACGATAACATCTATGCACGGGCACAACAGCATATAGCTATGCAGAAAATTGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCGAAAGAATCCCAACAAGCGAAGAAAGCCCTACTAAAGTTTTATGTTTAACTGAGGCCGTCACTACTGAACAATTAACTGATAATGGAGAGTATGAAGAAATATTGGAAGACATGCGTGATGAATGCCGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTACAGGTATTGGAAAGGTGTTCTTGGAATACTCTGACTGTACTGCTTGTTTGGCTGCAAAAAATGCTCTAAATGGTAGAAAATTTGGAGGCAATACTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCATAGTATGGAGTATGATTTATAA 1572 0.4351 MSDIENHANHAASSPDKPSSRGSGHESTRMRRRDGDRKTFHDHRGDRHRDNKYEGFKGRDKYDSYNRQRGRDYDRHNDYDRDRDTRSRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFTNEQTIASFFSHVMLAIGGNSAGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIGVAVRVRRPTDYNPSLAAVLGPCQPSSNLNLSAVGLTAGTIGGSEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEDDNIYARAQQHIAMQKIALEVVGLNIPGVERIPTSEESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLMNVVIPRPNPNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGNTVTAVYYPEEKYHSMEYDL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00473 523 CDD RRM3_U2AF65 421 509 - -
Trre4g00473 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 367 IPR000504 GO:0003723
Trre4g00473 523 Gene3D - 290 392 IPR012677 -
Trre4g00473 523 Gene3D - 174 269 IPR012677 -
Trre4g00473 523 PANTHER RNA-BINDING PROTEIN 19 521 - -
Trre4g00473 523 FunFam U2 snRNP auxiliary factor large subunit 174 272 - -
Trre4g00473 523 CDD RRM2_U2AF65 296 372 - -
Trre4g00473 523 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 521 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre4g00473 523 FunFam U2 snRNP auxiliary factor large subunit 418 522 - -
Trre4g00473 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Trre4g00473 523 MobiDBLite consensus disorder prediction 1 21 - -
Trre4g00473 523 FunFam U2 snRNP auxiliary factor large subunit 273 385 - -
Trre4g00473 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 259 IPR000504 GO:0003723
Trre4g00473 523 MobiDBLite consensus disorder prediction 1 134 - -
Trre4g00473 523 SMART rrm1_1 297 370 IPR000504 GO:0003723
Trre4g00473 523 SMART rrm1_1 423 509 IPR000504 GO:0003723
Trre4g00473 523 SMART rrm1_1 180 255 IPR000504 GO:0003723
Trre4g00473 523 SUPERFAMILY RNA-binding domain, RBD 297 514 IPR035979 GO:0003676
Trre4g00473 523 Gene3D - 417 522 IPR012677 -
Trre4g00473 523 CDD RRM1_U2AF65 178 257 - -
Trre4g00473 523 SUPERFAMILY RNA-binding domain, RBD 78 247 IPR035979 GO:0003676
Trre4g00473 523 MobiDBLite consensus disorder prediction 22 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00473 Trre-Chr4 3239917 3248291 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00473 290 372 Eukaryotic Initiation Factors Gene Family AT1G71770 25.301 5.28e-06 47.4