Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00472 ATGTCTGACATCGAAAATCACGCAAATCATGCTGCTTCTTCCCCCGATAAGCCAAGTTCCCGGGGATCTGGTCATGAGAGCACAAGGATGAGAAGGAGAGATGGAGACAGGAAAACTTTTCATGACCACCGTGGTGACCGTCACAGAGATAATAAGTATGAGGGTTTTAAAGGAAGAGATAAATATGACAGTTATAATCGTCAACGTGGCCGTGATTATGATAGGCATAATGACTATGATCGGGACAGAGATACAAGGAGCAGATATGGAGCACATTCAAAGAGGTCCAGGAGGGAATCTAGATCTAGGTCACGGTCCAGATCCCCTTCTCAATCTGAAGGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTGCTACGGGTGTAACACCCACCGTTTCAGGGCAAATGCCGGGGATTGCTCATATGATTCAAGGAGCTACCCAAAATTTCTCACCATATGGGATATCACAGATTGGAGCTCTTTCCTTAATGCAAGTTCAACCTATGACACAGCAGGCTACAAGGCATGCTCGGCGAGTGTATGTTGGTGGGCTTCCTCCTTTTACCAACGAGCAGACAATTGCATCTTTCTTTAGCCATGTCATGCTTGCTATTGGTGGAAATTCTGCTGGAACAGGTGATTCGGTTGTCAATGTGTACATTAATCACGAGAAGAAATTTGCGTTTGTGGAGATGAGAACCGTTGAAGAAGCTAGCAATGCAATGGCTTTAGATGGAATAGTATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACTGACTATAACCCTTCACTGGCTGCAGTTCTAGGTCCTTGCCAGCCAAGTTCAAACCTTAACTTGTCTGCCGTTGGACTTACTGCAGGAACAATTGGTGGATCCGAGGGACTTGATCGCATATTTGTGGGTGGACTGCCGTACTACTTTACTGAAGTACAAATGAGGGAATTGCTTCAAGCTTTTGGTCCTCTCCGGAATTTTGATATAGTTAGAGATAAAGACACGGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCTGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGAGATAAAACATTGACTGTAAGGCGTGCTACTGTCAGTGGACATTCTAAACCAGAAGACGATAACATCTATGCACGGGCACAACAGCATATAGCTATGCAGAAAATTGCTTTGGAAGTGGTTGGGCTAAATATTCCAGGAGTCGAAAGAATCCCAACAAGCGAAGAAAGCCCTACTAAAGTTTTATGTTTAACTGAGGCCGTCACTACTGAACAATTAACTGATAATGGAGAGTATGAAGAAATATTGGAAGACATGCGTGATGAATGCCGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCCAAACGGAGAGCTGTCTACAGGTATTGGAAAGGTGTTCTTGGAATACTCTGACTGTACTGCTTGTTTGGCTGCAAAAAATGCTCTAAATGGTAGAAAATTTGGAGGCAATACTGTGACTGCTGTTTATTATCCAGAAGAAAAATATCATAGTATGGAGTATGATTTATAA 1581 0.4345 MSDIENHANHAASSPDKPSSRGSGHESTRMRRRDGDRKTFHDHRGDRHRDNKYEGFKGRDKYDSYNRQRGRDYDRHNDYDRDRDTRSRYGAHSKRSRRESRSRSRSRSPSQSEGKRTSGFDMAPPATGVTPTVSGQMPGIAHMIQGATQNFSPYGISQIGALSLMQVQPMTQQATRHARRVYVGGLPPFTNEQTIASFFSHVMLAIGGNSAGTGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSSNLNLSAVGLTAGTIGGSEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRNFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKPEDDNIYARAQQHIAMQKIALEVVGLNIPGVERIPTSEESPTKVLCLTEAVTTEQLTDNGEYEEILEDMRDECRKFGTLMNVVIPRPNPNGELSTGIGKVFLEYSDCTACLAAKNALNGRKFGGNTVTAVYYPEEKYHSMEYDL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00472 526 CDD RRM1_U2AF65 178 260 - -
Trre4g00472 526 SUPERFAMILY RNA-binding domain, RBD 78 259 IPR035979 GO:0003676
Trre4g00472 526 Gene3D - 174 272 IPR012677 -
Trre4g00472 526 Gene3D - 420 525 IPR012677 -
Trre4g00472 526 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 21 524 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre4g00472 526 PANTHER RNA-BINDING PROTEIN 19 524 - -
Trre4g00472 526 MobiDBLite consensus disorder prediction 1 21 - -
Trre4g00472 526 Gene3D - 293 395 IPR012677 -
Trre4g00472 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 370 IPR000504 GO:0003723
Trre4g00472 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 262 IPR000504 GO:0003723
Trre4g00472 526 MobiDBLite consensus disorder prediction 1 134 - -
Trre4g00472 526 FunFam U2 snRNP auxiliary factor large subunit 421 525 - -
Trre4g00472 526 CDD RRM3_U2AF65 424 512 - -
Trre4g00472 526 SUPERFAMILY RNA-binding domain, RBD 300 517 IPR035979 GO:0003676
Trre4g00472 526 MobiDBLite consensus disorder prediction 22 89 - -
Trre4g00472 526 FunFam U2 snRNP auxiliary factor large subunit 174 275 - -
Trre4g00472 526 SMART rrm1_1 180 258 IPR000504 GO:0003723
Trre4g00472 526 SMART rrm1_1 426 512 IPR000504 GO:0003723
Trre4g00472 526 SMART rrm1_1 300 373 IPR000504 GO:0003723
Trre4g00472 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Trre4g00472 526 FunFam U2 snRNP auxiliary factor large subunit 276 388 - -
Trre4g00472 526 CDD RRM2_U2AF65 299 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00472 Trre-Chr4 3239917 3248291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00472 293 375 Eukaryotic Initiation Factors Gene Family AT1G71770 25.301 5.47e-06 47.4