Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00456 ATGGCGGATGATGGATTTCAATTACCACTGTTTGTTGACGATGGAGATGAATCTGATGATGAAAAGCTTGCAATGGATATCGAATCGTTTCTTAGCGTTCTTGATGAAGATTGTGTTCCTTCTGAGAGTAGTCACGAGGATTCTTCACTGAAAGACGTTTCACCTGGAGAATCTGGGATCCATGATAATTTTTTTCTTCAAAATGGGAGTTCTGTGCTTGACTCTGAACATGAAAACCAGGGACCTTCATCACAGACCTGTTCTTCTCCAAATGCTTTTGCTGGTGGCTACATGGACTCGTTATCTGTTTTTGAAAATGATGAAACATGCTATGCAGAAAGGGCAGGAGTTTCTGAACATGAGATGTCTTCTTATAGTGCGGACACAAATTTCGCCGAGGCAAATTCAAATTCAAATACTGCAACTGTTTGTCGAGATAATTTGAATTTGAGCTTGTGGGAGGGTTACAATAATAGCCAAATCAAGCATGTGGGAGATGATATAGAATCTGAACATGCTTCACACAGCTCTATCATAGAGAATGTTGATGGATCTTTGGAAGATTATGAAACAGCGTTGAAAGAAATTATCGGAGTTCCTAGGCAGCAGGAAAATGACTCATGTACATCTTTTGAAATGCCGTTTGTGGATGTTAACAGGCCTACATATTTTGGAACTTCAACTGATTCTACTATTTGTCAAGGTTCGGATGTTCGTAGTGATTACAGTGGCTACTATCCATCTTTGGATTGTTACCTGGGTCAAGATGTTAGACCTGTTGTTACCAACAGTTCTGGTTATTTGCCTAACGGTGTTTGTCCTGAATTCTGGAAAAATGAAGAGACGATGGGGAATATGAAGGTTGAAAAAATGGAGTCCTTAACTGACACTACAAATATGATTGGCGGCATGCATTTGAGCTCTATTGGCCGGATCCCTTTTCAGGATAGTCAATTTATGCCAGCCGATAGTGATTATCCTTCATTTTTTCCTGGCGACGTTGTATTTGAAGACAGTGAATCAGTGCAACGATCATCTTGTGCTCCATATATTTCTAGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGTTATGCCTTACCAAAATACTTTCCAGAATAACAATGCTGAGTTAAATGCTGGTCCAGAGCTGAAACAATTACCCTGTATTTTCCCTACCAATGGATGTCAGAATTATGATTTTTTCAGGAGTGAGGATAGGGCTACTACTGTAAAAACTGAGAATGCCAATTATTATCAAGATCTTGTTGATAGAACTGCTAATAAATTTCCAGGAAACATTGGAAATTTGAATTCCAGATCCTTAAACAAATCTATATCTGTTGCCCAGGCATCAATTACCAACGGGAAGCGGTACAATTGTGGTATGAGTGAACTAGAGAGTAAACCAAGTATTGATTCTCAGTTTTCCAAAAGAAGTACCGAGGGATCCAATGACGAAGATGACTGCGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATTTGCCGAACTCGAGAATTCCCTTAACATGTCCCAATCTGCTAGATTTGATTATCCCCATACTTATATGTCAGGAGGCACAAGACCAAAGGCACGTGATGAGCAGTACATATTACAAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGCCTACCTGACGGACTTCTGGCAGTTCCTCTTTTACGTCACCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATACTTAAGGAAATGCCTCCATTGCTTAAGACGTGCAATAATGCTCAAAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTGCCTGAGAATGGTGTAGTGAAGATGGAATCTAATGTCTGTCAATCTAATAGAAATGCAATCACAAGTGGGAATTTGTCGGTGCATGCAAAGGGTAGACCATCTGCGGGAACCCTTGTTGTTTGTCCAACTAGTGTGCTGCGACAGTGGGCTGATGAGCTGCATAATAAGGTAACCTGCAAAGCAAATATCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAATATGATGTTGTTTTGACAACCTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGGAGAAAAAGGAATTTATGAAGATCATGCCGTGCCAAGTAGGAAAAGGAAATGCCCTACTAGTTCTAAAAGCAGCAAGAAGGCTTTGAACAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTAGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAGCGCCGATGGTGCTTGTCAGGGACTCCAATCCAGAACTCCATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCGTATGCCGTGTACACATCATTCTGTTCTACAATCAAGATTCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAATCATGTTACGCCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGTGACCACCCTCTGCTTGTCAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAGACGGCAATGAAGCTTCCTCAGGAAAAACAGTTGTTTCTTTTAAAATGTTTAGAGGCTTCCCTGGCCATCTGCGGTATCTGTAATGATGCTCCTGAAGAAGCTGTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTAACTGGTGAGGACAATCAGTGTCCTGCTACAAACTGCAAAACTCGACTTAGCATGTCTTCTGTGTTTCCCAGAGCCACACTGAACAGTTCTTTATCAGGTTCTGTGGTTGAGGATTCTGAACCTTGTTCTCAGAGTCAACCATGTGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGCAGTCGTTGTCTAAGCCACAATGCCATAATTCCCAAAAAAAATCTGTGCAGAGCACTTCTCGGGATAGTACTGATTGCAGCTCCACTTCTGCCGATAGTAGTGAAGTTCCCGAACAGAAAACAGTGTTTATGGAGAAAAGCTCTAATGATTCAGTTGGTTCTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTAGATTTACTTGAATCTTGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTCATGTCAAGAGATAAAGCTGTTAAAGATTTTAACACACTACCTGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCTTGCCACGTTCTCATGCTAGATCTATGGTGGAATCCTACAACAGAAGATCAGGCGATAGACAGAGCGCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTGACTGTAAAAGATACAGTTGAAGACCGTATTTTAGCTTTGCAGCAAAAAAAGAGACAGATGGTTGCATCTGCATTTGGAGAGGATGGAAATGGTGATCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3918 0.4117 MADDGFQLPLFVDDGDESDDEKLAMDIESFLSVLDEDCVPSESSHEDSSLKDVSPGESGIHDNFFLQNGSSVLDSEHENQGPSSQTCSSPNAFAGGYMDSLSVFENDETCYAERAGVSEHEMSSYSADTNFAEANSNSNTATVCRDNLNLSLWEGYNNSQIKHVGDDIESEHASHSSIIENVDGSLEDYETALKEIIGVPRQQENDSCTSFEMPFVDVNRPTYFGTSTDSTICQGSDVRSDYSGYYPSLDCYLGQDVRPVVTNSSGYLPNGVCPEFWKNEETMGNMKVEKMESLTDTTNMIGGMHLSSIGRIPFQDSQFMPADSDYPSFFPGDVVFEDSESVQRSSCAPYISSEGQSFNVKAEGDEMVMPYQNTFQNNNAELNAGPELKQLPCIFPTNGCQNYDFFRSEDRATTVKTENANYYQDLVDRTANKFPGNIGNLNSRSLNKSISVAQASITNGKRYNCGMSELESKPSIDSQFSKRSTEGSNDEDDCDVCIIEDISHPAPTSRFAELENSLNMSQSARFDYPHTYMSGGTRPKARDEQYILQVALQDLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKEMPPLLKTCNNAQKSVLETLDLDDDPLPENGVVKMESNVCQSNRNAITSGNLSVHAKGRPSAGTLVVCPTSVLRQWADELHNKVTCKANISVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDGEKGIYEDHAVPSRKRKCPTSSKSSKKALNSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPQEKQLFLLKCLEASLAICGICNDAPEEAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLSMSSVFPRATLNSSLSGSVVEDSEPCSQSQPCDSSKIKAALEVLQSLSKPQCHNSQKKSVQSTSRDSTDCSSTSADSSEVPEQKTVFMEKSSNDSVGSLGEKAIVFSQWTGMLDLLESCLKNSSIQYRRLDGTMSVMSRDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRQMVASAFGEDGNGDRQSRLTVDDLKYLFMM 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00456 1305 ProSitePatterns Zinc finger RING-type signature. 1021 1030 IPR017907 -
Trre4g00456 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1304 IPR027417 -
Trre4g00456 1305 MobiDBLite consensus disorder prediction 1102 1142 - -
Trre4g00456 1305 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 427 1304 - -
Trre4g00456 1305 SMART ring_2 1006 1044 IPR001841 -
Trre4g00456 1305 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 660 750 - -
Trre4g00456 1305 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1130 1300 IPR001650 -
Trre4g00456 1305 SMART ultradead3 569 867 IPR014001 -
Trre4g00456 1305 Gene3D - 662 750 IPR038718 -
Trre4g00456 1305 Gene3D - 751 891 IPR038718 -
Trre4g00456 1305 MobiDBLite consensus disorder prediction 468 491 - -
Trre4g00456 1305 CDD SF2_C_SNF 1150 1257 - -
Trre4g00456 1305 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 588 852 IPR014001 -
Trre4g00456 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 560 890 IPR027417 -
Trre4g00456 1305 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 772 902 - -
Trre4g00456 1305 Pfam Helicase conserved C-terminal domain 1150 1247 IPR001650 -
Trre4g00456 1305 Gene3D - 1057 1304 IPR027417 -
Trre4g00456 1305 SMART helicmild6 1164 1247 IPR001650 -
Trre4g00456 1305 Gene3D - 542 637 IPR038718 -
Trre4g00456 1305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 999 1056 IPR013083 -
Trre4g00456 1305 ProSiteProfiles Zinc finger RING-type profile. 1006 1045 IPR001841 -
Trre4g00456 1305 CDD DEXDc_SHPRH-like 573 890 - -
Trre4g00456 1305 MobiDBLite consensus disorder prediction 468 483 - -
Trre4g00456 1305 SUPERFAMILY RING/U-box 1003 1063 - -
Trre4g00456 1305 Pfam Zinc finger, C3HC4 type (RING finger) 1006 1042 - -
Trre4g00456 1305 Pfam SNF2-related domain 593 967 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00456 Trre-Chr4 3089731 3103805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00456 476 1304 RAD5 or RAD16-like Gene Family AT1G61140 62.383 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre4g00456 SNF2_N 1.2e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00456 - - gmx:100805307 1749.56