Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00455 ATGACCATGGCGGATGATGGATTTCAATTACCACTGTTTGTTGACGATGGAGATGAATCTGATGATGAAAAGCTTGCAATGGATATCGAATCGTTTCTTAGCGTTCTTGATGAAGATTGTGTTCCTTCTGAGAGTAGTCACGAGGATTCTTCACTGAAAGACGTTTCACCTGGAGAATCTGGGATCCATGATAATTTTTTTCTTCAAAATGGGAGTTCTGTGCTTGACTCTGAACATGAAAACCAGGGACCTTCATCACAGACCTGTTCTTCTCCAAATGCTTTTGCTGGTGGCTACATGGACTCGTTATCTGTTTTTGAAAATGATGAAACATGCTATGCAGAAAGGGCAGGAGTTTCTGAACATGAGATGTCTTCTTATAGTGCGGACACAAATTTCGCCGAGGCAAATTCAAATTCAAATACTGCAACTGTTTGTCGAGATAATTTGAATTTGAGCTTGTGGGAGGGTTACAATAATAGCCAAATCAAGCATGTGGGAGATGATATAGAATCTGAACATGCTTCACACAGCTCTATCATAGAGAATGTTGATGGATCTTTGGAAGATTATGAAACAGCGTTGAAAGAAATTATCGGAGTTCCTAGGCAGCAGGAAAATGACTCATGTACATCTTTTGAAATGCCGTTTGTGGATGTTAACAGGCCTACATATTTTGGAACTTCAACTGATTCTACTATTTGTCAAGGTTCGGATGTTCGTAGTGATTACAGTGGCTACTATCCATCTTTGGATTGTTACCTGGGTCAAGATGTTAGACCTGTTGTTACCAACAGTTCTGGTTATTTGCCTAACGGTGTTTGTCCTGAATTCTGGAAAAATGAAGAGACGATGGGGAATATGAAGGTTGAAAAAATGGAGTCCTTAACTGACACTACAAATATGATTGGCGGCATGCATTTGAGCTCTATTGGCCGGATCCCTTTTCAGGATAGTCAATTTATGCCAGCCGATAGTGATTATCCTTCATTTTTTCCTGGCGACGTTGTATTTGAAGACAGTGAATCAGTGCAACGATCATCTTGTGCTCCATATATTTCTAGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGAGATGAAATGGTTATGCCTTACCAAAATACTTTCCAGAATAACAATGCTGAGTTAAATGCTGGTCCAGAGCTGAAACAATTACCCTGTATTTTCCCTACCAATGGATGTCAGAATTATGATTTTTTCAGGAGTGAGGATAGGGCTACTACTGTAAAAACTGAGAATGCCAATTATTATCAAGATCTTGTTGATAGAACTGCTAATAAATTTCCAGGAAACATTGGAAATTTGAATTCCAGATCCTTAAACAAATCTATATCTGTTGCCCAGGCATCAATTACCAACGGGAAGCGGTACAATTGTGGTATGAGTGAACTAGAGAGTAAACCAAGTATTGATTCTCAGTTTTCCAAAAGAAGTACCGAGGGATCCAATGACGAAGATGACTGCGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATTTGCCGAACTCGAGAATTCCCTTAACATGTCCCAATCTGCTAGATTTGATTATCCCCATACTTATATGTCAGGAGGCACAAGACCAAAGGCACGTGATGAGCAGTACATATTACAAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGCCTACCTGACGGACTTCTGGCAGTTCCTCTTTTACGTCACCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATACTTAAGGAAATGCCTCCATTGCTTAAGACGTGCAATAATGCTCAAAAAAGTGTATTAGAAACCTTGGATTTGGATGATGACCCACTGCCTGAGAATGGTGTAGTGAAGATGGAATCTAATGTCTGTCAATCTAATAGAAATGCAATCACAAGTGGGAATTTGTCGGTGCATGCAAAGGGTAGACCATCTGCGGGAACCCTTGTTGTTTGTCCAACTAGTGTGCTGCGACAGTGGGCTGATGAGCTGCATAATAAGGTAACCTGCAAAGCAAATATCTCTGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCTTATGAGCTTGCCAAATATGATGTTGTTTTGACAACCTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGGAGAAAAAGGAATTTATGAAGATCATGCCGTGCCAAGTAGGAAAAGGAAATGCCCTACTAGTTCTAAAAGCAGCAAGAAGGCTTTGAACAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTAGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAGCGCCGATGGTGCTTGTCAGGGACTCCAATCCAGAACTCCATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCGTATGCCGTGTACACATCATTCTGTTCTACAATCAAGATTCCTATCAGCAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACAATCATGTTACGCCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATATCTTTGCCACCTAAATCTGTGGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGTACTGTGAAGCAAAACTATGTCAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGTGACCACCCTCTGCTTGTCAAGCGTTACAATTCTACTACTCTCTGGAAATCTTCAGTTGAGACGGCAATGAAGCTTCCTCAGGAAAAACAGTTGTTTCTTTTAAAATGTTTAGAGGCTTCCCTGGCCATCTGCGGTATCTGTAATGATGCTCCTGAAGAAGCTGTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTAACTGGTGAGGACAATCAGTGTCCTGCTACAAACTGCAAAACTCGACTTAGCATGTCTTCTGTGTTTCCCAGAGCCACACTGAACAGTTCTTTATCAGGTTCTGTGGTTGAGGATTCTGAACCTTGTTCTCAGAGTCAACCATGTGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGCAGTCGTTGTCTAAGCCACAATGCCATAATTCCCAAAAAAAATCTGTGCAGAGCACTTCTCGGGATAGTACTGATTGCAGCTCCACTTCTGCCGATAGTAGTGAAGTTCCCGAACAGAAAACAGTGTTTATGGAGAAAAGCTCTAATGATTCAGTTGGTTCTCTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTAGATTTACTTGAATCTTGTCTTAAGAATTCTTCAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTCATGTCAAGAGATAAAGCTGTTAAAGATTTTAACACACTACCTGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCTTGCCACGTTCTCATGCTAGATCTATGGTGGAATCCTACAACAGAAGATCAGGCGATAGACAGAGCGCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTGACTGTAAAAGATACAGTTGAAGACCGTATTTTAGCTTTGCAGCAAAAAAAGAGACAGATGGTTGCATCTGCATTTGGAGAGGATGGAAATGGTGATCGTCAAAGTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 3924 0.4118 MTMADDGFQLPLFVDDGDESDDEKLAMDIESFLSVLDEDCVPSESSHEDSSLKDVSPGESGIHDNFFLQNGSSVLDSEHENQGPSSQTCSSPNAFAGGYMDSLSVFENDETCYAERAGVSEHEMSSYSADTNFAEANSNSNTATVCRDNLNLSLWEGYNNSQIKHVGDDIESEHASHSSIIENVDGSLEDYETALKEIIGVPRQQENDSCTSFEMPFVDVNRPTYFGTSTDSTICQGSDVRSDYSGYYPSLDCYLGQDVRPVVTNSSGYLPNGVCPEFWKNEETMGNMKVEKMESLTDTTNMIGGMHLSSIGRIPFQDSQFMPADSDYPSFFPGDVVFEDSESVQRSSCAPYISSEGQSFNVKAEGDEMVMPYQNTFQNNNAELNAGPELKQLPCIFPTNGCQNYDFFRSEDRATTVKTENANYYQDLVDRTANKFPGNIGNLNSRSLNKSISVAQASITNGKRYNCGMSELESKPSIDSQFSKRSTEGSNDEDDCDVCIIEDISHPAPTSRFAELENSLNMSQSARFDYPHTYMSGGTRPKARDEQYILQVALQDLSQPKSEVSLPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKEMPPLLKTCNNAQKSVLETLDLDDDPLPENGVVKMESNVCQSNRNAITSGNLSVHAKGRPSAGTLVVCPTSVLRQWADELHNKVTCKANISVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDGEKGIYEDHAVPSRKRKCPTSSKSSKKALNSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMKLPQEKQLFLLKCLEASLAICGICNDAPEEAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLSMSSVFPRATLNSSLSGSVVEDSEPCSQSQPCDSSKIKAALEVLQSLSKPQCHNSQKKSVQSTSRDSTDCSSTSADSSEVPEQKTVFMEKSSNDSVGSLGEKAIVFSQWTGMLDLLESCLKNSSIQYRRLDGTMSVMSRDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRQMVASAFGEDGNGDRQSRLTVDDLKYLFMM 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00455 1307 ProSiteProfiles Zinc finger RING-type profile. 1008 1047 IPR001841 -
Trre4g00455 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1001 1058 IPR013083 -
Trre4g00455 1307 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 590 854 IPR014001 -
Trre4g00455 1307 SMART ring_2 1008 1046 IPR001841 -
Trre4g00455 1307 SMART ultradead3 571 869 IPR014001 -
Trre4g00455 1307 MobiDBLite consensus disorder prediction 470 493 - -
Trre4g00455 1307 CDD SF2_C_SNF 1152 1259 - -
Trre4g00455 1307 CDD DEXDc_SHPRH-like 575 892 - -
Trre4g00455 1307 Gene3D - 753 893 IPR038718 -
Trre4g00455 1307 Gene3D - 664 752 IPR038718 -
Trre4g00455 1307 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 774 904 - -
Trre4g00455 1307 Pfam SNF2-related domain 595 969 IPR000330 GO:0005524|GO:0140658
Trre4g00455 1307 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 429 1306 - -
Trre4g00455 1307 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1132 1302 IPR001650 -
Trre4g00455 1307 Pfam Helicase conserved C-terminal domain 1152 1249 IPR001650 -
Trre4g00455 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 892 IPR027417 -
Trre4g00455 1307 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 662 752 - -
Trre4g00455 1307 Gene3D - 544 639 IPR038718 -
Trre4g00455 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 900 1306 IPR027417 -
Trre4g00455 1307 MobiDBLite consensus disorder prediction 470 485 - -
Trre4g00455 1307 Gene3D - 1059 1306 IPR027417 -
Trre4g00455 1307 SMART helicmild6 1166 1249 IPR001650 -
Trre4g00455 1307 Pfam Zinc finger, C3HC4 type (RING finger) 1008 1044 - -
Trre4g00455 1307 MobiDBLite consensus disorder prediction 1104 1144 - -
Trre4g00455 1307 ProSitePatterns Zinc finger RING-type signature. 1023 1032 IPR017907 -
Trre4g00455 1307 SUPERFAMILY RING/U-box 1005 1065 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00455 Trre-Chr4 3089725 3103805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00455 478 1306 RAD5 or RAD16-like Gene Family AT1G61140 62.383 0.0 995
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre4g00455 SNF2_N 1.2e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00455 - - gmx:100805307 1749.56