Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00444 ATGGGGTTTTTGAATTTGGAATTGCATGTGCAAATCTTTGTCACCACCATGATCGTGATTCTACTGGGGACTCTCTGTGTTGCTGACACTGACCCTGTTGATGTTGCTGCAATCAATAGCCTATATGTTGCTATGCACTCGCCACCTCTTCAAGGGTGGAAGCCTGTGGGAGGGGATCCATGTTTCGACCATTGGCAAGGTGTGGATTGTGTCTTCTCCAACATAACCGCCATACGACTATCAGGCTTGAATTTGGGTGGAGAGCTTGGCAGTAATTTGGATTTCCCGTCCATTATAGACATTGATCTTAGCAACAACCACATTGGAGGTTCCATTCCATTCACCCTACCGCCTACTTTGAGGACCATGTCTCTGTCGGGAAATCGGTTAAATGGAAGTATTCCAGATGCGTTATCCTTATTAACTCAATTGTCAAACTTGGATTTGGCCAATAACAACTTGACTGGTCAGCTGCCTTCCTCAATGGGGAGTTTATCGTCTCTTACAACATTACTGTTGCAGAACAATCACCTTGTAGGGACCCTTTTTGTTTTGCAGGACCTTCCTCTTCAGGATTTGGATATAGAGAATAATTTATTCTCTGGGCCGATTCCTCCAAATTTGTTGAGCATTGCTAATTTCAGAAAAGATGGGAATCCATTTAATACTACTATTATTCCATCTCCACCTGTTGCTGTTGCTGCAGCCCCTTTGCCTGCAGCTATCGGTCGATCCCCTGAAGAATCACCTTGGCATGTGGCATATAGTCCTTCTTCTGACTTCACAGCACCGATGCCTGGAAATGTTAAGAAGTCTTTCCTAGCTAAGTATGCCATTTGGATTGTCGGTGCCGGTTTATTAATATTTATCGTTATAGGAATTTGTATTTTTATGGCGTGTTTCTGTAAGAAAGAGCCAAAAAATAAAAATTCTCAGAACCTTGATGTGGAGGGCTTTCCACAAACTTTGCACAAACCTACTCGTAACGACACTGTTTTTGAAGCAACTAATCAAGATGGAAAAGCTGAGAAAACACCGCGTTTAAATGAAGTGCCGAATAGAAGAACAAATTTGATTCCAAAGGTTCAGGATGAACAAGAAGTATATCTCAACAAGCTCAACACGGTATCTTCAACTTCAGAAAACAATATTGGTTTCAAACCTCCACTCCTGCAGCCGCCGCCACATTCTCTGCCAATCATTCCTGGTGAGAAAGTCATCGTCAATCCAGCTGCAACTACAAAAACCGAAAAACAAGCTATGATTAGTTCAGTCAAAATGTATACTGTTGCATCACTTCAGCAATATACAAATAGCTTTTCCCAAGAAAATCTTATCGGTGAAGGCACTCTTGGATCTGTTTATAGGGCCGAGCTCCCTGATGGAAAGCTGTTGGCAGTGAAGAAACTGGATGCTACCGCTTTCAAGGACCAGAATGATGAACAGTTTCTTCAATTGGTATCCAGCATCTCAAAAATTCAGCATGCCAATATCGCAAAGCTTGTGGGCTACTGTACTGAGTATAACCAACGATTACTTATATACGAGTATTGTAATAATGGAACCCTATATGACGCACTTCATGGTGATGACGAACATTGTATTAAATTTCCATGGAATGCACGCATTAAGGTTGCACTTGGAGCTGCAAGGGCCTTAGAGTATCTGCATGAAAACTTTCGGCCGCCTATTGTTCACCGAAATTTTAGATCTGTTAATGTTCTCCTGAATGAAAAGTCGGAAGTGCGTGTCTCTGATTGTGGATTAGGTCACTTGCTATCTTCTGGCACTGTTGGTCAGTTATCTGGACGCCTCCTTACAGCTCATGGTTACAGCGCTCCAGAATTTGAGTTGGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTCGGAGTCGTAATGCTAGAACTCCTCACTGGAAGAAAATCCTATGACAGGTCACGGCCTCGTGGAGAGCAATTTTTGGTCAGATGGGCTATTCCTCAACTTCATGACATTGATGCATTGTCAAAAATGGTTGATCCTCGCTTAAATGGATCATATTCTATGAAGTCGTTGTCACGCTTTGCAGATATTGTTTCTTCATGTATTCAGCGTGAACCCGAATTCCGGCCAGCTATGTCGGAAATTGTTCAGGATCTCTTGCTAACAATGTAG 2157 0.4242 MGFLNLELHVQIFVTTMIVILLGTLCVADTDPVDVAAINSLYVAMHSPPLQGWKPVGGDPCFDHWQGVDCVFSNITAIRLSGLNLGGELGSNLDFPSIIDIDLSNNHIGGSIPFTLPPTLRTMSLSGNRLNGSIPDALSLLTQLSNLDLANNNLTGQLPSSMGSLSSLTTLLLQNNHLVGTLFVLQDLPLQDLDIENNLFSGPIPPNLLSIANFRKDGNPFNTTIIPSPPVAVAAAPLPAAIGRSPEESPWHVAYSPSSDFTAPMPGNVKKSFLAKYAIWIVGAGLLIFIVIGICIFMACFCKKEPKNKNSQNLDVEGFPQTLHKPTRNDTVFEATNQDGKAEKTPRLNEVPNRRTNLIPKVQDEQEVYLNKLNTVSSTSENNIGFKPPLLQPPPHSLPIIPGEKVIVNPAATTKTEKQAMISSVKMYTVASLQQYTNSFSQENLIGEGTLGSVYRAELPDGKLLAVKKLDATAFKDQNDEQFLQLVSSISKIQHANIAKLVGYCTEYNQRLLIYEYCNNGTLYDALHGDDEHCIKFPWNARIKVALGAARALEYLHENFRPPIVHRNFRSVNVLLNEKSEVRVSDCGLGHLLSSGTVGQLSGRLLTAHGYSAPEFELGSYTQQSDVFSFGVVMLELLTGRKSYDRSRPRGEQFLVRWAIPQLHDIDALSKMVDPRLNGSYSMKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00444 718 SUPERFAMILY L domain-like 32 213 - -
Trre4g00444 718 Pfam Protein tyrosine and serine/threonine kinase 443 714 IPR001245 GO:0004672|GO:0006468
Trre4g00444 718 Gene3D Ribonuclease Inhibitor 35 230 IPR032675 -
Trre4g00444 718 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 714 IPR046959 -
Trre4g00444 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 143 232 - -
Trre4g00444 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 518 718 - -
Trre4g00444 718 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 142 - -
Trre4g00444 718 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 407 517 - -
Trre4g00444 718 Gene3D Transferase(Phosphotransferase) domain 1 518 716 - -
Trre4g00444 718 ProSiteProfiles Protein kinase domain profile. 440 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00444 718 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Trre4g00444 718 Gene3D Phosphorylase Kinase; domain 1 404 517 - -
Trre4g00444 718 SUPERFAMILY Protein kinase-like (PK-like) 421 715 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00444 Trre-Chr4 3006715 3011335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00444 20 715 Strubbelig Receptor Gene Family AT4G03390 49.667 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre4g00444 PK_Tyr_Ser-Thr 5.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00444 - - gmx:100793423 991.104