Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00441 ATGGGGACGGAGGTGATAGGTAGATGGGGGACATGGGAGGAGCTCCTCCTTGGTGGGGCGGTTCTCCGCCACGGGACTCGTGACTGGAACGTCGTTGCCGCTGAGCTCCGAGCACGAACCGTTTGTCCTTACACTTTTACCCCTGAGGTCTGTAAAGCCAAGTATGAAGACTTGCAACAACGGTATTCTGGGAGCACGGCTTGGTTTGAGGAGCTTAAGAAAACAAGAGTGGCAGAGTTGAAGAAAGCTTTGGAGCGATCTGAAGATTCTATTGGGTCTCTTGAATCGAAGCTTGAAGTCCTCAAGGCTGAGAAGAATGAGAAAAACGATAATCGTGAAAATGGCCTAGAAAGTCCGGTATCAAATGTACCTTCCAAGAAATTGAAGATATTGGAGAGAGTTGAATCTTCCACTAAAGAGACATCGAAGGACGGGCTATCTGCCGGAAGTTTCACACACGAAACGATGACAAACTGGTCTCCTGAATCCCAGGTTCCAGCTAGGTCTGCCGATGATAATGAGACTAAGCCGGAAGTTTCACAATCTACTGAGCAGGCTAAAATTTCGAACCTAGATAATTTGGCACTTGCTTTATATGAAGGACAATTAGGATGTTGTAAAAAACGGAGAGGGAAGAGAAAAAGGAAGGATTGTAGTAGAAATATTAAGGAAGCAGCTAGTGTAGGAGAAAGTGACTTATTAGATTCAGCTGATGTTGTTTCTTGGTGTAAAGAAAGTTCTACTAGTAACTGTGGTGAAGTTGCCAAATCTTCTGTTGATGTAGATGATCAGAAAAATAAGAATTCGAAAAAGCGTGGCACGGAAGATATGGTTAAGATTTTAGATTCTATTTTTGAAACTAAAGGTGCATCTACCTTCCGTCGAAGACTTGGTGGTCAGAAAAGAGGAAGGTACAAGAAAACGATCCGGCGGCACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACCAAACAATTAAATCAACCGTAGAACTATTCCGAGACTTGTTGCTACTCACCAACAATGCCTTAGTCTTCTACTCGAAGAACACTCGCGAATATAAAACTGCTCTCCTTCTAAGAGAAATAGTCACCAAAAAAATGAGGGAGAGTTTCAAGGATAGTAATAGTATTGTTAGTAGCAGCAAAGTCAGCAAAATCACCGAACCTAACGAGTCTATGAAACTACCGGTGCATAATCTTCATGTGAAACCAAGAAGTGTAAGACCCGGTAACAGAAAAATCATTGCAAAGGCAGGTGGTGGCAATAACTCTGCATCTGGGACATCACAAGGAGCTAAGAAGCCGATTAAAGCTGATTCTTCGCCTTCCGTGGAATCCTTAAATGTCACGAAAAAAACTTTTGGTAGACCGAAAAGAGTTGAACGTCTGACTTCAGATCAAAAGACTACAACACCAACGAAAGGAAAGAAAAGAGTTAGAACAAAGTCATAG 1458 0.4252 MGTEVIGRWGTWEELLLGGAVLRHGTRDWNVVAAELRARTVCPYTFTPEVCKAKYEDLQQRYSGSTAWFEELKKTRVAELKKALERSEDSIGSLESKLEVLKAEKNEKNDNRENGLESPVSNVPSKKLKILERVESSTKETSKDGLSAGSFTHETMTNWSPESQVPARSADDNETKPEVSQSTEQAKISNLDNLALALYEGQLGCCKKRRGKRKRKDCSRNIKEAASVGESDLLDSADVVSWCKESSTSNCGEVAKSSVDVDDQKNKNSKKRGTEDMVKILDSIFETKGASTFRRRLGGQKRGRYKKTIRRHMDFDTIRSRISNQTIKSTVELFRDLLLLTNNALVFYSKNTREYKTALLLREIVTKKMRESFKDSNSIVSSSKVSKITEPNESMKLPVHNLHVKPRSVRPGNRKIIAKAGGGNNSASGTSQGAKKPIKADSSPSVESLNVTKKTFGRPKRVERLTSDQKTTTPTKGKKRVRTKS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00441 485 MobiDBLite consensus disorder prediction 141 168 - -
Trre4g00441 485 MobiDBLite consensus disorder prediction 104 186 - -
Trre4g00441 485 MobiDBLite consensus disorder prediction 405 485 - -
Trre4g00441 485 CDD Bromodomain 274 369 - -
Trre4g00441 485 ProSiteProfiles Bromodomain profile. 285 355 IPR001487 GO:0005515
Trre4g00441 485 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 8 443 - -
Trre4g00441 485 SUPERFAMILY Bromodomain 274 376 IPR036427 GO:0005515
Trre4g00441 485 Coils Coil 77 111 - -
Trre4g00441 485 SMART bromo_6 270 374 IPR001487 GO:0005515
Trre4g00441 485 Pfam Bromodomain 278 358 IPR001487 GO:0005515
Trre4g00441 485 MobiDBLite consensus disorder prediction 423 452 - -
Trre4g00441 485 Gene3D - 260 376 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00441 Trre-Chr4 2974063 2979073 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre4g00441 Bromodomain 9.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00441 - - gmx:100793951 665.996