LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g00430	ATGAAGTACAATCCACGAGTCTCCAGCAGCCGCCGCAAGAGCCGCAAGGCTCATTTCACGGCACCGTCAAGTGTCCGCCGTGTTCTAATGAGCGCACCTCTTTCCGCCGATCTCCGATCCAAATACAACGTCCGTTCAATGCCAGTTCGCAAAGACGATGAAGTTCAGGTTGTTCGTGGACTCTACAAAGGCCGTGAAGGAAAGGTTACTCAAGTTTACCGTCGCAAATGGGTGATTCACATTGAACGTATCACAAGAGAGAAGGTTAATGGATCTACTGTTAATGTTGGTGTTAATCCTTCCAAAGTTGTTATCACTAAGCTCAGACTTGATAAGGATAGGAAATCTCTTCTTGATAGGAAGGCTAAGGGTCGTGCTGCTGCTGATAAGGAGAAGGGAACCAAGTTTGCTACTGAAGATATTATGCAGAATGTTGATTATTATCCCTGGCTGATATAG	459	0.4575	MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSADLRSKYNVRSMPVRKDDEVQVVRGLYKGREGKVTQVYRRKWVIHIERITREKVNGSTVNVGVNPSKVVITKLRLDKDRKSLLDRKAKGRAAADKEKGTKFATEDIMQNVDYYPWLI	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g00430	152	FunFam	60S ribosomal protein L26	1	144	-	-
	Trre4g00430	152	CDD	KOW_RPL26	52	105	IPR041988	GO:0003723
	Trre4g00430	152	MobiDBLite	consensus disorder prediction	1	20	-	-
	Trre4g00430	152	NCBIfam	50S ribosomal protein L24	8	122	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Trre4g00430	152	PANTHER	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	1	141	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Trre4g00430	152	Gene3D	-	1	144	IPR014722	-
	Trre4g00430	152	SUPERFAMILY	Translation proteins SH3-like domain	8	125	IPR008991	-
	Trre4g00430	152	Pfam	KOW motif	51	82	IPR005824	-
	Trre4g00430	152	Pfam	Ribosomal proteins L26 eukaryotic, L24P archaeal	8	121	IPR005756	GO:0003735\|GO:0006412\|GO:0015934
	Trre4g00430	152	ProSitePatterns	Ribosomal protein L24 signature.	52	69	IPR005825	GO:0003735\|GO:0005840\|GO:0006412
	Trre4g00430	152	SMART	kow_9	48	75	IPR005824	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g00430	Trre-Chr4	2897889	2899053	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g00430	1	146	Cytoplasmic Ribosomal Protein Gene Family	AT3G49910	86.986	3.59e-93	265

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g00430	K02898		-	csav:115713026	236.884