Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre4g00419 | ATGAATGACTTATTCTCAAGCTCCTTCAAGAAATATAGTGACTTGAAGGAGCAATCTCACAATGATGTAGAAGCAGGAAAAGAAAGTATCAACCTTGATAAATTCTTTGAAGATGTTGAGAATGTGAAAGAAGATATGAGGCTAGTCGAAAAGCTATATAGAAAATTGCAAGAGTCTAATGAAGAAAGCAAAATTGTCCATAATGCTAAGACAATGAAAGATCTTAGAGCAAGGATGGATAAAGATGTTGAACAGGTTCTGAAAAGAGTTAAAATCATAAAAGGTAAGCTTGAAGCATTAGAACGTTCGAATGCCGCGAATAGAAATATTCCGGGATGTGGTCCAGGTTCATCAGCAGATAGAACAAGAACTTCTGTGGTTAGTGGTTTGGGAAAAAAACTCAAAGATATGATGGATGATTTTCAAGGATTAAGAGCTAGAATGCAACAAGAATATAAGGAAACAATTGAAAGAAGGTATTTTACAATAACAGGTGAAAAAGCTGATGAAGATACTATTGAGAATTTAATATCAAGTGGAGAAAGTGAAACTTTTATGCAAAGAGCAATTCAAGAACAAGGTAGAGGTCAAATTATGGACACAATATCTGAGATACAAGAAAGACATGATGCTGTTAAGGAAATAGAGAAAAACTTGATTGAGTTACATCAAGTTTTTTTGGACATGGCAGCACTTGTTGAATCACAAGGACAACAATTGAATAATATAGAGAGTCATGTTGCACATGCTAGTTCTTTTGTTAGAAGAGGAACAGAACAACTTCATGAGGCAAGAGAACATCAAAAGGATTCAAGGAAATGGACATGTTATGCTATACTTCTTGGTATTGTCCTAATCATTGTGATCCTATTTCCATTCTTGATGTCACTTCTACCTCATTTGATACTGAGGTAG | 915 | 0.3454 | MNDLFSSSFKKYSDLKEQSHNDVEAGKESINLDKFFEDVENVKEDMRLVEKLYRKLQESNEESKIVHNAKTMKDLRARMDKDVEQVLKRVKIIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQQEYKETIERRYFTITGEKADEDTIENLISSGESETFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLHEAREHQKDSRKWTCYAILLGIVLIIVILFPFLMSLLPHLILR | 304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre4g00419 | 304 | FunFam | Syntaxin 132 | 195 | 295 | - | - | |
| Trre4g00419 | 304 | Pfam | Syntaxin | 34 | 237 | IPR006011 | GO:0016020 | |
| Trre4g00419 | 304 | ProSitePatterns | Syntaxin / epimorphin family signature. | 208 | 247 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Trre4g00419 | 304 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 202 | 264 | IPR000727 | - | |
| Trre4g00419 | 304 | Pfam | SNARE domain | 239 | 290 | IPR000727 | - | |
| Trre4g00419 | 304 | SMART | SynN_4 | 27 | 153 | IPR006011 | GO:0016020 | |
| Trre4g00419 | 304 | PANTHER | SYNTAXIN | 42 | 288 | IPR045242 | - | |
| Trre4g00419 | 304 | CDD | SynN | 32 | 189 | IPR006011 | GO:0016020 | |
| Trre4g00419 | 304 | SUPERFAMILY | t-snare proteins | 31 | 257 | IPR010989 | GO:0016020|GO:0016192 | |
| Trre4g00419 | 304 | SMART | tSNARE_6 | 197 | 264 | IPR000727 | - | |
| Trre4g00419 | 304 | Coils | Coil | 83 | 103 | - | - | |
| Trre4g00419 | 304 | Gene3D | - | 32 | 159 | - | - | |
| Trre4g00419 | 304 | CDD | SNARE_syntaxin1-like | 201 | 261 | - | - | |
| Trre4g00419 | 304 | Gene3D | - | 191 | 294 | - | - | |
| Trre4g00419 | 304 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 29 | 159 | - | - | |
| Trre4g00419 | 304 | Coils | Coil | 39 | 62 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre4g00419 | Trre-Chr4 | 2832726 | 2833640 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre4g00419 | 1 | 303 | SNARE and Associated Proteins | AT1G61290 | 77.632 | 3.76e-178 | 492 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre4g00419 | K08486 | - | gmx:100818999 | 543.502 |